Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2518 ATGGGTGGTGGGAGCGAGAGCTCGAAGGGCGTGGTTATGGGTCGTTTGGTTGAGTGCATAAAGGGGATTTCTGGGTTGCCAGAGTGTCAGAACTTCTGCAAGATGGTGTATGGGAATTTGGTTCGAAGGGTGAAACTGTTGAGTCCTCTCTTTGAGGAATTGAAGGATAGTGACGAGTCCCTCAGCGATGAACTGCTTCAAAGCTTTGAGTCTCTCTTGGTTGCTTTGGATTCAGCTAAGACACTTTTAAAGGATGTGAACCAAGGGAGTAAGCTTTATCAGGCTTTCCAGAGGAATGATACAGCAGATAAATTCCAAAAAATAACTGAAAAAATTGAAGCTGTGCTCGGTGAAATTCCTTACAACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATCGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCCCAAACAGAATTTGCTGATATACAACTAGACCTTGATATGCAAGTGGCACAAAAAGAAAAAGACCCTGATCCTGCTATGCTGAAGAGACTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAATGGTGGAGAACTAGGCGACTCTTTTGAAATGATCACATCCCTTCTTAGCAAACTGAGGGAATGTGTGCTCACAGAAAATCCTGAAGTTGACACCGGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCTGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCCACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGCATTGAGCTACCAAAGAAGCAAGGGAGCTGTAGAACAAAGATATGTGGTGGAAGCAGTATTTCAGATTGTGATCGAACTGCTATTAGTGCTTTGCTGGATAAACTAACGAGTAATGATATAGAACAGCAAAGGGCTGCTGCTGGTGAGCTCCGGTTGCTGGCTAAGAGGAATGCAGACAACAGAGTATGCATTGCTGATGCAGGAGCAATACCGCCTCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACCCAGGAGCATGCTGTTACAGCGCTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGTAAATGCCGGAGCCATACCAGATATTGTAGATGTACTGAAAAATGGCAGCATGGAGGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAGGTGCAAATTGGTGCAGCTGGAGCTATCCCTGCTCTTATAAAGTTACTCTGTGAGGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAACCTATCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGTCCCACTGATACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATCCTTGTGAGCCACCATGAAGGAAGGGTGGCAATTGGTCAGGCCGAGCCAATTCCTATTCTCGTTGAGGTTATACGAACTGGCTCTCCACGCAACCGAGAGAATGCTGCTGCTGTCTTGTGGTCGCTGTGCACCGGAGATCCGCTGCAATTAAAACTAGCAAAAAAACATGGTGCAGAAGCAGCACTGCAAGAGTTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGCATATTGGAACTCTTGCAGCGAATGGAAGGGGATGATAATCAGTGA 1890 0.4386 MGGGSESSKGVVMGRLVECIKGISGLPECQNFCKMVYGNLVRRVKLLSPLFEELKDSDESLSDELLQSFESLLVALDSAKTLLKDVNQGSKLYQAFQRNDTADKFQKITEKIEAVLGEIPYNKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDLDMQVAQKEKDPDPAMLKRLSEKLHLRTINDLRKESSELHELLITNGGELGDSFEMITSLLSKLRECVLTENPEVDTGECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKICGGSSISDCDRTAISALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIADAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVVPLIQFLKDAGGGMVDEALAILAILVSHHEGRVAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPLQLKLAKKHGAEAALQELSENGTDRAKRKAGSILELLQRMEGDDNQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2518 629 Coils Coil 584 604 - -
Aed1g2518 629 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Aed1g2518 629 SMART arm_5 499 539 IPR000225 GO:0005515
Aed1g2518 629 SMART arm_5 376 416 IPR000225 GO:0005515
Aed1g2518 629 SMART arm_5 540 580 IPR000225 GO:0005515
Aed1g2518 629 SMART arm_5 458 498 IPR000225 GO:0005515
Aed1g2518 629 SMART arm_5 417 457 IPR000225 GO:0005515
Aed1g2518 629 SUPERFAMILY RING/U-box 247 323 - -
Aed1g2518 629 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Aed1g2518 629 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Aed1g2518 629 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 13 624 - -
Aed1g2518 629 Gene3D - 332 624 IPR011989 -
Aed1g2518 629 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515
Aed1g2518 629 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Aed1g2518 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Aed1g2518 629 PANTHER U BOX DOMAIN-CONTAINING 13 624 - -
Aed1g2518 629 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Aed1g2518 629 CDD RING-Ubox_PUB 252 294 IPR045210 -
Aed1g2518 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 321 IPR013083 -
Aed1g2518 629 Gene3D - 12 121 IPR036537 GO:0007166
Aed1g2518 629 SUPERFAMILY ARM repeat 344 620 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2518 Aed-Chr1 20876705 20881437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2518 12 625 U-box Gene Family AT3G54850 66.124 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2518 - - gmx:100777452 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2518 1 20876705 20881437 Aed1g2518 1 20876705 20881437 ECH