Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2506 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGCGTTGCCACTGGCTCCGGAATTTCGCCCTACAGATACTGAATTTGCTGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATTCCACCGTTGCCCAGACCTTCAAAAAAATATGTTTTTTCCAATTTGAGTAGGTCACTCTTGAATTGCCCTGATTTACGTCCAGATAATAGTTCATTAGGTGTTTGTAATTCATCGAAAACTGGTTCTGGGGATGGTAGTACTGATGGGGTGTCGCGAGCTGTGTTTACTACAAGGCATCAAGAACTGGGGCAGAGTCAGAGTGTGAAAAAATCCAAAGGGACAGTTCAGAATCCACTGTCAAGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCGAAAAGCATGCTAGGTTCGGTGAAGGATGTTTCTCCTCAGGTTATAGAGTCTCTGTTTTGGAAGGCAACTTTAGAGAAGCCTATATATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGAAGAGTCCAAGGGTCAATTTCATTATAGTCATAGAAGGCATAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTTTGATTGTAAACAAATTGAAATGGGTTGCGTAAGAGATACCCAAACTGATGAGACAAAGGTTGCTTCTGTCCAAAGTCAAGCAGACACATGTTTACTGATGGCCAAATCAGCTACAACTGTGTCAACATTTTCATCAAACGAAGATTCACAATCTTCTAAGGAAAAGAATTCAGATGCCAGCAATGAAATGCATGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTAACACGTTTTATGCCAGATGATATTCCTGGCGTCACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACCGGCTCATCAAAGACTTGGTATGCTGTTCCCGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACCGAGGGTTATGGTGGCAATATTGATCACCTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACTCAGCACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCTGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGCGTGCGTAGTTCTCGTCTAAGAGACCGTCAGAAAGATGAGAAGGAGTTTTTAGTAAAACAGGCTTTTATAGAAGACATGCTTCAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCAGCTAAAAAAGCTGTTTTATGGAATGCTGATCTACTGCCTGATTCCAGCAAAGATTTTCAGTTGCCTGATTTAACTTCTACCACTAGAACCTCTATGGCAGATATGTCAAATATTAGTTCTGCAGAAAAGAGTAGTCATTATCTGCTTGATGAGATGAGTTTGTATATGGAGAATTTGACTAATTTAGATCTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAAGCGAGAAATTGATAATGGAACTTCTTCCTGATAATCATCATTTAGTTCAAGTTTCCTCTCCAGACTCTACTGCTTGCGTTCATAGTTCCATCTCAAGGGATCTTTCTGTTTCCAATCTTTCATCAGTAGAGGAGTTGCCAGATCAATCATTAAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAGTTTTTGAGGCCTCGGATTTTCTGCTTGGAGCATGCTGTTCAAATAGTTGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGTCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGAAGTTGCGGAAGAGATACATAGTGCTTTTGGTTATAATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTCTGATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTAAAGACTGGACATCTAAACTAGGCATTAACATACGGAATTGTGTCCATGCAAGAAATAACTCTGCATCTAAACAAGTTCCTTGGTTACTAGGGACGCTGTTCTATAATAAATGTCTTGCTTCAAAATCTTTAGCTTTAAATTGGCAGTCACGAAGATCTCGGTCAAAAAGGTCAAGTTGTTTAGCTCAGACTAAACCCTGCAACAGCATTGAGAGAAAGAAGGATGATCAGTCAGATGGAAGAATAGATGATACCCCTGCTGAAAAGAAGCTACTTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGGTGTTTCCCTGTAGCAAGCATGGTCTGTGAATTCCAAGAGAAGTCCAAAAATGTGTTGGCTACTTTGAGTGGGGATCATAATAATTGTGTTTCTAAAACTGAGCTTGAAGCTGAGAATTTCAGGAGTGATTGTGCATTGTCATGTGTCTCTGCTTCTACTGAAATGTCTCCAATGCATCCTCAAATCCAGATTGCTGAAATGCCTGCTAGCAAGAGATTAAATGATGCTAAGTCACAACCTCCAAATTCCATTCCTGATCATATTTTAATGATTGAAGAAGTTGGAGCAGAGATTGAGAAGCAAACCATGCAGGAATCAGATGTAGACAGAAGTAATGAATTAACACTCAGTCATTCTAAGATGCATTGCCATACCAGCGTCTCAGAAATATGTGGCAAGGAGAGCCAAGATTGTCAGGACAAGAAATGTTCTAGCTCACTTACAAAAGCAACAGATAGAAATATTGAAATGATTAGAAAGACTGAAAGTGCAGAAGCAGTTATCATTGATAGCAAGTGTAATAGCTTAACTTTGGATGGCAAAGGGCAACAAGAATACCAGTCTACCTGCAAAAGCAACAATGAGGAAGCTGCTTTATCACCTGCTTCATTGGTAAATGGATCTACACTTGCATCTGTGGTTGAAAGTTTTGAAATTCCAAATAATAGTTATACTGCTGAAAAAATTAGCAATCCTATTTTCCTAGAAAAGTCAACCGAGGATGAAATTGATTCTTTAAGTGAAAGGGACAAGGAACCTCTAGTTGATGACAGACCAATTAGCGAACAATCTCCCAAAGACGTTTGTGAAGTTCGAAGAGAGCATTATGCATCTGCAGACTTGGATAGTGAGATGCAACAAGAAACTCAGAGCGGAAAAGATAGCAGAAAGGAAATAAATCAGTCCACTCATGTTTCAGCAATTACAAGCAGGGAATATGCTGAAGGGTTGAATGATGAAGTGATTCCAAAGTCTGTGGAGCAGTGTCAGGTTGAAAATATGAATAAAATTAATGAGGAACCTGTTTCTAGTTATGTTGCAAAAGGTGAAAATAAATGCGTAACATCATCAAATATAGGATGTTCTGAAGATTTAGTGGAAACCTGTCCCACAGAAGACTGCGGCATTCAGTTGGTTTCAGATAAAGGAAAAGAAACGGAAATCCAGTCAACTGGTAGAACTGATGAGGAATTTTCCTCTGGCACTGATACATCAATAAATGACTCCTCTCTATCAATCCAGGAATGTTCTAAAATTGAGAAAGAGAGCGGTGTTACAGAAAACATAGATGGAATGAAAGCCGATTTGCCACAAGATAATAGGGAGCTGGAAAGCTGTGCGTTGACTACAGCAGTTTCCAGATCAAATTCTGGGAAGAATAAAAAGAGAAAAGTGGATCATACAACAAAGAACCAATCCAGTCGTGACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGATTGGTGCTGGCAAAAGCGAGGTGGAAATCAACCAAGATGACAAGGAAAATCAGGTGGCTAAAAGGACAAGGAGATCTTCTGAAGCTTTGGTTCCTTGCAAAAGTAAAAAGGATGATGTTAAAAAGCCCCATAAGTGTGACCTTGATGGTTGCCGAATGAGTTTCAAGACCAAGGCTGAGTTACTATTGCATAAACGCAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAATGGGCTTGGGCAAGGACAGAGCACATACGCGTGCATACCGGGGAGAAGCCTTATCACTGCAAGGTCAAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCACCATGTGAAACCTGCTGCTTGA 4605 0.4089 MGSVEIPNWLKALPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPRPSKKYVFSNLSRSLLNCPDLRPDNSSLGVCNSSKTGSGDGSTDGVSRAVFTTRHQELGQSQSVKKSKGTVQNPLSSVHKQVWQSGEVYTLEQFESKSKSFAKSMLGSVKDVSPQVIESLFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRHRKRTYYKSRLDSFDCKQIEMGCVRDTQTDETKVASVQSQADTCLLMAKSATTVSTFSSNEDSQSSKEKNSDASNEMHGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQHPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKDEKEFLVKQAFIEDMLQENKLLSILLGKEAAKKAVLWNADLLPDSSKDFQLPDLTSTTRTSMADMSNISSAEKSSHYLLDEMSLYMENLTNLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPSEKLIMELLPDNHHLVQVSSPDSTACVHSSISRDLSVSNLSSVEELPDQSLNKCNKCWNTSSKFLRPRIFCLEHAVQIVEMLQSKGGANVLIICHSDYQKIKAHAREVAEEIHSAFGYNEVPLDTASPENLTLIDLAIDGEEHDECKDWTSKLGINIRNCVHARNNSASKQVPWLLGTLFYNKCLASKSLALNWQSRRSRSKRSSCLAQTKPCNSIERKKDDQSDGRIDDTPAEKKLLQYSRRKFKSKQRCFPVASMVCEFQEKSKNVLATLSGDHNNCVSKTELEAENFRSDCALSCVSASTEMSPMHPQIQIAEMPASKRLNDAKSQPPNSIPDHILMIEEVGAEIEKQTMQESDVDRSNELTLSHSKMHCHTSVSEICGKESQDCQDKKCSSSLTKATDRNIEMIRKTESAEAVIIDSKCNSLTLDGKGQQEYQSTCKSNNEEAALSPASLVNGSTLASVVESFEIPNNSYTAEKISNPIFLEKSTEDEIDSLSERDKEPLVDDRPISEQSPKDVCEVRREHYASADLDSEMQQETQSGKDSRKEINQSTHVSAITSREYAEGLNDEVIPKSVEQCQVENMNKINEEPVSSYVAKGENKCVTSSNIGCSEDLVETCPTEDCGIQLVSDKGKETEIQSTGRTDEEFSSGTDTSINDSSLSIQECSKIEKESGVTENIDGMKADLPQDNRELESCALTTAVSRSNSGKNKKRKVDHTTKNQSSRDNFIRSPCEGLRPRAGKIGAGKSEVEINQDDKENQVAKRTRRSSEALVPCKSKKDDVKKPHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVKGCGLSFRFVSDFSRHRRKTGHHVKPAA 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2506 1534 Gene3D Cupin 9 466 - -
Aed1g2506 1534 SUPERFAMILY Clavaminate synthase-like 293 459 - -
Aed1g2506 1534 SUPERFAMILY beta-beta-alpha zinc fingers 1443 1479 IPR036236 -
Aed1g2506 1534 MobiDBLite consensus disorder prediction 1266 1292 - -
Aed1g2506 1534 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Aed1g2506 1534 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Aed1g2506 1534 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1036 - -
Aed1g2506 1534 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1140 1523 - -
Aed1g2506 1534 ProSiteProfiles Zinc finger C2H2 type domain profile. 1502 1532 IPR013087 -
Aed1g2506 1534 Pfam jmjN domain 17 50 IPR003349 -
Aed1g2506 1534 MobiDBLite consensus disorder prediction 266 291 - -
Aed1g2506 1534 SMART c2h2final6 1442 1466 IPR013087 -
Aed1g2506 1534 SMART c2h2final6 1502 1528 IPR013087 -
Aed1g2506 1534 SMART c2h2final6 1419 1441 IPR013087 -
Aed1g2506 1534 SMART c2h2final6 1472 1496 IPR013087 -
Aed1g2506 1534 ProSitePatterns Zinc finger C2H2 type domain signature. 1474 1496 IPR013087 -
Aed1g2506 1534 SMART JmjN_1 15 56 IPR003349 -
Aed1g2506 1534 SMART cupin_9 293 462 IPR003347 -
Aed1g2506 1534 MobiDBLite consensus disorder prediction 1124 1183 - -
Aed1g2506 1534 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Aed1g2506 1534 SUPERFAMILY beta-beta-alpha zinc fingers 1482 1532 IPR036236 -
Aed1g2506 1534 Gene3D Classic Zinc Finger 1440 1528 - -
Aed1g2506 1534 ProSitePatterns Zinc finger C2H2 type domain signature. 1444 1466 IPR013087 -
Aed1g2506 1534 ProSiteProfiles Zinc finger C2H2 type domain profile. 1442 1471 IPR013087 -
Aed1g2506 1534 MobiDBLite consensus disorder prediction 1276 1292 - -
Aed1g2506 1534 MobiDBLite consensus disorder prediction 1124 1194 - -
Aed1g2506 1534 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1036 - -
Aed1g2506 1534 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1140 1523 - -
Aed1g2506 1534 ProSitePatterns Zinc finger C2H2 type domain signature. 1504 1528 IPR013087 -
Aed1g2506 1534 MobiDBLite consensus disorder prediction 1333 1363 - -
Aed1g2506 1534 ProSiteProfiles Zinc finger C2H2 type domain profile. 1472 1501 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2506 Aed-Chr1 20753445 20768877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2506 1 877 C2H2 Transcription Factor Family AT5G04240 56.013 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2506 JmjC 1.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2506 - - gmx:100799861 2716.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2506 1 20753445 20768877 Aed1g2506 1 20753445 20768877 ECH