Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2502 ATGGTGACAAAGGCAAATTCAAGTACCTCAATTTTTCAAAAGAAAGGTGCTTTTGAGGGAAAACTTAAGGCCCTTTTGCCCAAAGAAGTTAACGAAGTTGAGAAAGGAAACAATTGGGTACAACAAGTATGCAACGGCAGCAGTGAGGACCCACTTAACTGGGGCATGGCTGCGGATGCTTTGAAAGGTAGCCACCTCGATGAGGTGAAGCGCATGGTGGAGGACTACCGTAACCCGCTGGTCATGTTAGGTGGCAAGAGCCTCTCGGTGTCTCAGGTGGCGGCGGTTGCCACCCGCCACAACAGCGGCGGTGTCACGGTGGAACTGGCGAAGGAGACCCGACACGGTGTTAAGGCCAGCAGTGATTGGGTTATTGACGGCAAGGGCAGTGATAGCAATGGAATCGGCAGAGGGTTCGGTGCAACCTCACACAGGAAAACCAACCAAGGCGCTGCTCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGCAATGGCACAGAGTCATGCCACACCTTACCTAACTCGGTCACAAGGGCAACCATGTTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGCATCAGATTTGAAATCATGGAGGCCATGACCAAGTTTTTGAACCACAACATAACACCATGCCTCCCTCTACGTGGCACAGTCACTGCATCAGGTGATTTAATCCCTTTATCATATGTTGCTAGCCTCTTGATTGGAAGGCCAAACTCCAAGTCTATTGGACCAAATGGACAAGTTCTTAATGCTAAAGAGTCCTTTCAACTAGCTGAAATTGATGGTGGTTTCTTTGAGTTACAACCTAAAGAGGGTTTGGCATTAGTTAATGGCACTGCAGCAGGATCTGGCTTGGCTTCCATTGTTCTTTTTGAGGCAAACTTACTTGTTGTCCTCTCAGAAGTCTTGTCTGCAATATTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCACCACCCTGGTCAAATTGAAGCTGCAGCTATCATGGAACATATATTAGATGGAAGCTCTTATGTTAAGGCAGCACAGAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAGTGGCTTGGACCACAAGTCGAAGTAATTAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCTTTGATTGATGTTTCAAGGAATAAGACACTTCAAGGAGGAAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACACGTTTGGCCATTGCATCAATTGGGAAACTCATGTTTGCTCAATTCTCTGAACTTGTGAATGACTTCTACAACAATGGTTTGCCTTCAAATCTAACGGCTAGTCGCAACCCGAGCTTGGATTATGGATTCAAAGGGGCTGAAATAGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCACTCATGTCCAGAGTGCTGAGCAGCATAACCAAGATGTGAACTCTTTAGGCTTCATTTCCTCTAGAAAGACAGCTGAAGCAATAGACATATTGAAGCTCATGTCATCCACTTTCTTAGTTGCATTATGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAATTTGAAGAACACTGTCAAGAATGTTGTGAGTCAAGTGGCCAAAAGGGTTTTCATAGTAGAAGTCAATGATGAGTTACATCCTTTTATGTTTTGTGAGAAGGATCTTCTCAAAGTTATTGACCGTGAATATTTGTTTGCTTACATTGATGATCCTTGTAGTGCAACCTACCCTTTAATGCAAAAGCTAAGATTAGTCTTAGTTGATCATGCATTGCAAAATGGTGACAAAGAAGCAAATTCAAGTACCTCATTTTTCCAAAAAATAGGAACCTTAGAGGAAGAGATCAAGGCCCTTTTGCCCAAAGAGGTGGAAAATGCTAGGATTGAATTTGAGAATGGAAATCCTGTTATTCCTAATCGAATTAAGGAATGCAGGTCGTATCCATTGTACAAGTTTGTCAGAGAAGATTTGGGTGCAACTTTGTTGACAGGTGAGAAAGTTAGGTCACCTGGTGAAGAATGTGATAAGGTATTTATTGCATTATGTGAAGGGAAGTTTATTGAACCTATGTTGGACTGTCTGAAAGAGTGGAATGGTGCTCCTCTACCAATATGCTGA 2226 0.429 MVTKANSSTSIFQKKGAFEGKLKALLPKEVNEVEKGNNWVQQVCNGSSEDPLNWGMAADALKGSHLDEVKRMVEDYRNPLVMLGGKSLSVSQVAAVATRHNSGGVTVELAKETRHGVKASSDWVIDGKGSDSNGIGRGFGATSHRKTNQGAALQNELIRFLNAGIFGNGTESCHTLPNSVTRATMLVRINTLLQGYSGIRFEIMEAMTKFLNHNITPCLPLRGTVTASGDLIPLSYVASLLIGRPNSKSIGPNGQVLNAKESFQLAEIDGGFFELQPKEGLALVNGTAAGSGLASIVLFEANLLVVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQVEVIRHATKMIEREINSVNDNPLIDVSRNKTLQGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGFISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRVFIVEVNDELHPFMFCEKDLLKVIDREYLFAYIDDPCSATYPLMQKLRLVLVDHALQNGDKEANSSTSFFQKIGTLEEEIKALLPKEVENARIEFENGNPVIPNRIKECRSYPLYKFVREDLGATLLTGEKVRSPGEECDKVFIALCEGKFIEPMLDCLKEWNGAPLPIC 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2502 741 SUPERFAMILY L-aspartase-like 49 741 IPR008948 GO:0003824
Aed1g2502 741 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 223 239 IPR022313 GO:0016841
Aed1g2502 741 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 50 731 IPR005922 GO:0005737|GO:0006559|GO:0016841
Aed1g2502 741 Gene3D Fumarase/aspartase (Central domain) 288 736 - -
Aed1g2502 741 Pfam Aromatic amino acid lyase 88 568 IPR001106 -
Aed1g2502 741 Gene3D - 42 287 IPR024083 -
Aed1g2502 741 Gene3D - 554 675 IPR023144 -
Aed1g2502 741 PANTHER HISTIDINE AMMONIA-LYASE 44 741 IPR001106 -
Aed1g2502 741 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 44 741 - -
Aed1g2502 741 CDD PAL-HAL 86 551 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2502 Aed-Chr1 20736294 20739815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2502 50 741 Monolignol Biosynthesis Gene Families AT3G53260 78.098 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2502 K10775 - gmx:100818777 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0446 8 3734422 3738840 Aed1g2502 1 20736294 20739815 ECH
Aed2g1854 2 23250525 23266960 Aed1g2502 1 20736294 20739815 ECH
Aed1g2502 1 20736294 20739815 Aed1g2502 1 20736294 20739815 ECH