Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2501 CATTTTTCTCTCTCTCCCCTCAGGAAAATTATCTCAATTTCCCCCAAAAAAAGAAAATTTTCCATTTACAACTGTTATGCAAATCGCAGCGTGCAATCCCACATTTGTTCATTTGTTCCTTTCCAATTTCTAACTTCTCATGTACTACGTTCCTGTCCACCTAGCATAGCTACATATCACCCAACACTATATATCATTCACCTTGAGACAAACAACAACAACATATCCAACCAGGCCTGTTTTTTGAAGATGGAATATTCCAACAGCAATGCGAAGAATGGTTCATTGAACCTTTGCAATGGTGGCAGTACTGACCCACTCAACTGGGGGATGGCCGCGGAGGCTTTGAAAGGTAGCCACCTTGAGGAGGTCAAGCGCATGGTGGAGGACTACCGTAACCCGCTGGTGACTTTAGGTGGCAAGAGCCTCACGGTTTCTCAGGTGGCGGCGGTTGCCACCCGGCGCCACGGCGGCGTCACGGTGGAGCTGGCCAAGGAGACCTGCCACGGTGTAAAGGCAAGCAGTGACTGGGTTATGGATAGCATGGCGAAAGGTACTGATAGCTACGGCGTCACCACTGGGTTCGGTGCAACCTCGCACAGAAGAACCAAGCAAGGTGGTGCCCTCCAAAATGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGCAATGGAACAGAGTCTTGTCACACCTTACCTCACACAGCTACAAGAGCAGCAATGTTGGTAAGGATTAACACTCTGCTTCAAGGGTATTCAGGCATTAGATTTGAAATCATGGAGGCCATAACCAAGTTTTTGAACCACAACATAACCCCATGTCTTCCTCTACGTGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTGTCCTATGTTGCTGGTCTCTTAATTGGAAGACCAAACTCCAAGTCTATTGGACCAAATGGACAAGTTCTTAATGCTAAAGAGTCCTTTCAACTAGCAGGAATTGACGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTGAATGGAACTGCAGTGGGGTCTGGCTTGGCTTCCACGGTTCTTTTTGAGGCAAACTTACTAGTCATTCTCTCAGAGGTTTTGTCTGGAGTTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAAATTGAAGCTGCAGCTATCATGGAACATATATTAGATGGAAGCTCTTATGTTAAGGCAGCACAGAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAGGATAGGTATGCTCTTAGAACATCACCTCAGTGGCTTGGACCGCAAGTTGAAGTAATTCGGCATGCAACAAAGATGATTGAGAGGGAGATAAACTCTGTGAATGATAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTCCATGGGGGGAATTTCCAGGGTACTCCAATTGGTGTTTCAATGGATAACACACGTTTGGCCATTGCATCAATTGGGAAACTCATGTTTGCTCAATTCTCTGAACTTGTGAATGACTTCTACAACAATGGTTTGCCTTCAAATCTAACGGCTAGTCGCAACCCGAGCTTGGATTATGGATTCAAAGGGGCTGAAATAGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCACTCATGTCCAGAGTGCTGAGCAGCATAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCAAGAAAGACGGCTGAAGCAATGGATATATTGAAGCTCATGTCATCCACTTTCTTAGTTGCATTATGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAATTTGAAGAACACTGTCAAGAATGTTGTGAGTCAAGTGGCTAAAAGAGTTCTCACAGTTGGCATCAACGGTGAGTTGCATCCTTCTAGGTTCTGTGAGAAGGACTTGCTCAAAATTGTTGATCGTGAGTATGTCTATGCTTACATTGATGACCCCTTTAGTGCAACCTATCCTCTGATGCAAAAGTTGAGATTAGTCCTAGTTGATCATGCCTTGAAAAATGGTGACAAAGAGGCAAATTCAAGTACCTCAATTTTCCAGAAGATAATTGCTTTTGAGGAAGAGCTTCAGGCCATTTTGCCCAAAGAGGTGGAAAGTGCTAGGATTGAAGTTGAGAATGGAAATTCCTCTATTCCTAACAGAATTAAGGAATGCAGGTCTTATCCATTATATAAGTTTGTGAGAGAAAATTTGGGCACAACTTTGCTAACAGGTGAGAAAGTTAGGTCCCCGGGTGAGGAATTTGATAAGGTGTTTACTGCAATGTGTGAAGGGAAGTTCATTGATCCTTTGTTGGAGTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCAATATGCTAA 2394 0.439 HFSLSPLRKIISISPKKRKFSIYNCYANRSVQSHICSFVPFQFLTSHVLRSCPPSIATYHPTLYIIHLETNNNNISNQACFLKMEYSNSNAKNGSLNLCNGGSTDPLNWGMAAEALKGSHLEEVKRMVEDYRNPLVTLGGKSLTVSQVAAVATRRHGGVTVELAKETCHGVKASSDWVMDSMAKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKESFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASTVLFEANLLVILSEVLSGVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQVEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAMDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVYAYIDDPFSATYPLMQKLRLVLVDHALKNGDKEANSSTSIFQKIIAFEEELQAILPKEVESARIEVENGNSSIPNRIKECRSYPLYKFVRENLGTTLLTGEKVRSPGEEFDKVFTAMCEGKFIDPLLECLKEWNGAPLPIC 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2501 797 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 99 797 - -
Aed1g2501 797 CDD PAL-HAL 141 607 IPR001106 -
Aed1g2501 797 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 105 787 IPR005922 GO:0005737|GO:0006559|GO:0016841
Aed1g2501 797 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 279 295 IPR022313 GO:0016841
Aed1g2501 797 PANTHER HISTIDINE AMMONIA-LYASE 99 797 IPR001106 -
Aed1g2501 797 Gene3D - 610 731 IPR023144 -
Aed1g2501 797 Gene3D - 98 343 IPR024083 -
Aed1g2501 797 Gene3D Fumarase/aspartase (Central domain) 344 792 - -
Aed1g2501 797 SUPERFAMILY L-aspartase-like 105 797 IPR008948 GO:0003824
Aed1g2501 797 Pfam Aromatic amino acid lyase 143 624 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2501 Aed-Chr1 20730814 20735509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2501 98 797 Monolignol Biosynthesis Gene Families AT3G53260 80.731 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2501 K10775 - gmx:100801470 1341.64