Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2498 ATGGGAAGCAAGTGGAAGAAAGCCAAGGTGGCGCTCGGTCTCAATCTCTGCATGTTTCCCAGAACCTTAGACGACGATTCGCCGCCGAACACGGTGATTTCCGAGCGTCTCTCCGACGCTGCTCTGCTTTCTCCGGCCAACTGGAACACCAGCTCTTCCCGCCCAACCACGCCGCTTTCCTCTTTTCATGGTTTGAAACTCTCCAAAAGTAGCAGCAAATCCTCTAAGCAAACCTGCTCAATATGCTTAAACAAAATGAAACAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGCCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCTGGTCCCAGTTTGGATCCTATCCATGGCAGAGTTTCACCTAGTCCAATAAATTGGCCCCAAAATGATGCTTTGATGGCAGTGGTCCACCGTTTACCTCATCCTCATCCTCACCGAGATTTGAATAGGAGGCATGTTGTGCCACTTTATCAGGCTTCTGAGCCAGGCATATTTGATGATGATGAATCCTTAAATCATCAACATGCACTTTCTGAGAGAAGTGCCTGTAGTAAGAGTACTGAAGATACTGATGCTGCTAGAGCAATGGAGATTAAGACATTCCCAGAAGTATCTGCTGCTCTAGGATCCAAGACTTATTCTAACTTCACGGTTTTGGTTCATCTCAAAGCTACTGCTGCCACAGCAGCAGCTGCAGCCAAAAGACAAAACCTTAGTAGAAACCAGGCTAACTTGGCACAGATTTCTCAGACCCCACGTGCCCCTGTTGACTTGGTCACAGTGCTTGATGTCAGTGGTAGCATGGCTGGAACCAAGCTTGCACTCCTGAAAAGAGCTATGGGATTTGTCATACAGAACCTCGGCTCTAATGACCGGCTCTCTGTTATTGCTTTTTCTTCCACAGCTCGTCGCCTCTTTCCTTTGTGCAGAATGACTGATTCTGGGCGGCAGCAGGCATTGCAAGCTGTTAATTCTTTGGTGGCAAATGGCGGTACCAATATTGCCGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATACTGTTGTCCGATGGTCAAGATAATTACACTGTCAATGGCTCTGGAACTAACCAGCCTCAACCAAATTACCAGTTTCTTCTGCCAACTTCTATCAGTGGTGGTGATAATTCAGGATTTCAAATTCCCGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCTTCACTAATGCACTCAATTTCAGAGACTTCTGGTGGCACATTTTCTTTCATTGAGACTGAAGCTGTGTTACAGGATGCGTTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTTCAGGAGCTTCAAGTGGGAATTGAGTGTATACAACCAAATCTCAATCTTGTCTCACTCAAAGCAGGAAGTTACCCAAGCCGTTTGATGGCTGATGGACGCAAAGGTTCAATCGATGTTGGAGACCTGTATGCTGATGAAGAGAGGGATTTTCTAGTTTCAGTTAATGTGCCAGCTACATCCGGCAATGAAACATCATTGATAAAGGTCAAATGTGTGTACAAGGATCCCTTTACTCAGGAAACAGCAACATTGGAAAGTGAGGAAGTTAAGATTGAGCGGAGTGAAAATGTGGGGCAGGTTGTAATGTCACTTGAAGTGGACAGACAGCGCAACAGGCTCCAAGCGGCCGAGGCAATGGCCCAGGCACGCAGTGCAGCCGAACAGGGAGACCTAAGTAGAGCAGTATTTATCCTTGAGAACTGTAGAAAGATGCTTTCAGAGACTGTTTCAGCCAAATCTCATGACCGCCTTTGTGTTGCGCTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCGAGTAGGCATGTGTACGAAGCATCTGGGAGAGCATATATTCTTTCCGGTTTGAGTTCACACTCATGGCAAAGAGCAACAGCAAGAGGTGATTCCACCGATAGGTCAAGTCTTGTTCAGGCATATCAGACACCATCGATGGCCGAGATGCTCACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCGGGGCAGAGGCTTCTCCAGCCACTGTTGTCATACAGATCACAACCAAACCCAAGGTGA 2187 0.4655 MGSKWKKAKVALGLNLCMFPRTLDDDSPPNTVISERLSDAALLSPANWNTSSSRPTTPLSSFHGLKLSKSSSKSSKQTCSICLNKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIHGRVSPSPINWPQNDALMAVVHRLPHPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQHALSERSACSKSTEDTDAARAMEIKTFPEVSAALGSKTYSNFTVLVHLKATAATAAAAAKRQNLSRNQANLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGTNQPQPNYQFLLPTSISGGDNSGFQIPVHAFGFGADHDASLMHSISETSGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECIQPNLNLVSLKAGSYPSRLMADGRKGSIDVGDLYADEERDFLVSVNVPATSGNETSLIKVKCVYKDPFTQETATLESEEVKIERSENVGQVVMSLEVDRQRNRLQAAEAMAQARSAAEQGDLSRAVFILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQAYQTPSMAEMLTRSQAMLLGSPSGQRLLQPLLSYRSQPNPR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2498 728 CDD vWA_C3HC4_type 280 454 - -
Aed1g2498 728 Pfam von Willebrand factor type A domain 281 464 IPR002035 -
Aed1g2498 728 CDD RING-H2 79 123 - -
Aed1g2498 728 ProSiteProfiles VWFA domain profile. 281 467 IPR002035 -
Aed1g2498 728 Pfam Ring finger domain 78 123 IPR001841 -
Aed1g2498 728 SUPERFAMILY RING/U-box 75 129 - -
Aed1g2498 728 Coils Coil 626 646 - -
Aed1g2498 728 Gene3D von Willebrand factor, type A domain 281 468 IPR036465 -
Aed1g2498 728 ProSiteProfiles Zinc finger RING-type profile. 79 123 IPR001841 -
Aed1g2498 728 MobiDBLite consensus disorder prediction 48 70 - -
Aed1g2498 728 PANTHER OS10G0464500 PROTEIN 4 706 - -
Aed1g2498 728 SMART VWA_4 279 466 IPR002035 -
Aed1g2498 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 130 IPR013083 -
Aed1g2498 728 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 4 706 - -
Aed1g2498 728 Pfam VWA / Hh protein intein-like 630 702 IPR032838 -
Aed1g2498 728 SUPERFAMILY vWA-like 276 467 IPR036465 -
Aed1g2498 728 SMART ring_2 79 122 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2498 Aed-Chr1 20699765 20704855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2498 68 123 C3H Transcription Factor Family AT1G57730 41.071 6.40e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2498 - - gmx:100813569 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2498 1 20699765 20704855 Aed1g2498 1 20699765 20704855 ECH