Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2494 ATGGTTGGACCAAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCGAGGACGTCGACGGCGGCGCCTCCACCTTGCCGTCGGTCACCGCCGCGGGAAACTGCAACTCGCTGGCGAGCATCTGGCCCGCCGAGTCCGACTCGTTTCCCGCCTCCGACTCGGTGTTTTCCGGCAACAACAGCGCTTCGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAGGACATTGTCCAATTGGAATGGTTGTCGAACTTTGTGGAGGATTCGTTTTGTGGGGGGAGCCTAACAATGAACAAAGTGGAAGAGCCATCATGTACTACTATTACTAAGGAGGAGTCATCAGTGCACAACCAATTCTACACATCAAGCCCAGTTTCTGTGCTTGAGAGTAGCAGTTCTTGCTCTGGTGGCAAGACATTGCCACCACGCAGTCCAGAGATTTACATCCCTGTGGCATGTGGACGTGCACGCAGCAAGCGTCCACGTCCAGCGACCTTCAATCCAAGGCCTGCCATGAACCTGATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCATATCATCATCATCCAAGGCAGATTCTGAGAATTTTGCTGAGTCTCAGCTTGTTCCCAAGATGATGTCGAAGCAAGTTTCTTCTGGGGAGCCTAAGAAGAAGAAGAAAGTGAAGCTGCCACTTCCAGTTGGTGCAGCTGATAGCAATCAGAATGGCTCACAACCTGTTAGGAAATGTATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAGTACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCTGTGCACTCCAATTCTCATAAGAAGGTCATTGAAATGAGATGCAGGGGCATTGACAAATCTGGTTTTGCAATCAATTCACCTGAACTCATTCCAAACACTAACAGCAGCCTCACACTGGAGTACATGTGA 1056 0.5133 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGASTLPSVTAAGNCNSLASIWPAESDSFPASDSVFSGNNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMNKVEEPSCTTITKEESSVHNQFYTSSPVSVLESSSSCSGGKTLPPRSPEIYIPVACGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSSSKADSENFAESQLVPKMMSKQVSSGEPKKKKKVKLPLPVGAADSNQNGSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVIEMRCRGIDKSGFAINSPELIPNTNSSLTLEYM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2494 351 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Aed1g2494 351 PANTHER GATA TRANSCRIPTION FACTOR 8 1 351 - -
Aed1g2494 351 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Aed1g2494 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 317 - -
Aed1g2494 351 Gene3D - 254 304 IPR013088 GO:0006355|GO:0008270
Aed1g2494 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Aed1g2494 351 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
Aed1g2494 351 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
Aed1g2494 351 CDD ZnF_GATA 259 316 IPR000679 GO:0006355|GO:0043565
Aed1g2494 351 PIRSF Txn_fac_GATA_plant 3 341 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2494 Aed-Chr1 20662387 20666444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2494 19 322 C2C2-Gata Transcription Factor Family AT4G32890 37.143 1.04e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed1g2494 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2494 - - gmx:100815693 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2494 1 20662387 20666444 Aed1g2494 1 20662387 20666444 ECH
Aed7g0829 7 6328172 6333837 Aed1g2494 1 20662387 20666444 PCT