Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2493 ATGTTTAAGGTTATGGATTGCAGCAGCATGGAGAGGAGGGGCTCAATATCATCAGATCAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTGAACACTAAAGTCTTGTACTTTCCCCAGGGTCATGCCGAACACTCTCATGGGAAAGTAGATTTCGGCCAAACCCGTGTTCCACCTCTCATCCCTTGTAGGCTCTCTTCCATGAAATACATGGCTGACCCTGACACTGATGAGGTCTATGTCAAAATGAGACTCACCCCTTTGACTCTGAGGGAACGTGAATTGGATTTGGTCGAGGATGATTCTAATTTCTTGGGGAACACTAGTGTTGAGGCTCAACAAGAGAAGCCTCCAACTTCTTTTGCAAAGACACTCACACAATCTGATGCCAACAACGGTGGGGGGTTCTCAGTGCCTCGTTACTGTGCCGAAACCATCTTTCCGAGGTTGGATTACTCGGCTGAGCCTCCTGTTCAGACCATCATTGCAAAAGATATGCATGGTCAATGCTGGAAGTTCAGGCACATCTATAGAGGGACTCCAAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTTAATCAGAAGAGGCTTGTTGCTGGGGACTCTATTGTGTTTCTAAGAGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCCAAGAAGGGGATTGGTGGAGGGGCTGAGTTCTCTTCTGGATGGAACCCTCTCTTTGGTGGTGGTGGTGGTGGTTTCTTGTGTGGGAGTGAGAGCGGTTTGGTGAGTCGTGATGAGATGATGGTGGGAAGAGTGGCTGCTGAGTCTGTTGCTGAGGCTGTGACTTTTGCTGTTAATGGAAGGCCCTTTGAGGTTGTGTACTATCCCAGGGCTAGTTCACCTGAGTTTTGTGTTAAGGCTTCTGTTGTCAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCAATCCATTGGCCTGATTCACCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTAAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCAAACATGCCAACCTTCAATCTCTCAGCATACTCACCTCCAAGAAAGAAGCAACGTTTTCTACAGGACCCTTATTTTCAAGTGATCAACCAACTCCCAATGCCATCATTCTCTAGCAATCTAATCAATTACACCAACTCTCTTTGTACCATTGAAGATAATAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTAATTCCCTTCAACAAGCTCCCATCAGACATGCTTCTAGGTGGATTCTCAAGGCTTGACCATGCAGCAGCACAACCTATTAGGCCTCCTTGTGGAACTTATAATAAGAACAACACCACTACTAAGGCCAATGTTGACATTTCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAGTTTTAAGGAATCCAATGAAACAAAAACGCCCCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAAAAGAGCTCAAACACTAGCTCTGCTAGTACTAATGGGAATAGTGTATCTGAGGGGAATTCACTCAAGACTTCTAATGCTTCAGATGGCCCAATTGAGAACAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAACCGACAATGTTAACACATTGTGTATTGCTTTGTAA 1830 0.4541 MFKVMDCSSMERRGSISSDQRCLDSQLWHACAGAMVQMPPLNTKVLYFPQGHAEHSHGKVDFGQTRVPPLIPCRLSSMKYMADPDTDEVYVKMRLTPLTLRERELDLVEDDSNFLGNTSVEAQQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGAEFSSGWNPLFGGGGGGFLCGSESGLVSRDEMMVGRVAAESVAEAVTFAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLQDPYFQVINQLPMPSFSSNLINYTNSLCTIEDNNNSSAGIQGARHAQFGLSPSDLIPFNKLPSDMLLGGFSRLDHAAAQPIRPPCGTYNKNNTTTKANVDISCLLTVGNPGQSFKESNETKTPHILLFGKLIHTEQKSSNTSSASTNGNSVSEGNSLKTSNASDGPIENNSDGGSPWYKDQHKSDLGTDNVNTLCIAL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2493 609 SMART B3_2 131 233 IPR003340 GO:0003677
Aed1g2493 609 MobiDBLite consensus disorder prediction 548 588 - -
Aed1g2493 609 Gene3D - 322 395 - -
Aed1g2493 609 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Aed1g2493 609 SUPERFAMILY DNA-binding pseudobarrel domain 124 232 IPR015300 -
Aed1g2493 609 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 581 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed1g2493 609 MobiDBLite consensus disorder prediction 548 595 - -
Aed1g2493 609 Gene3D - 129 233 IPR015300 -
Aed1g2493 609 CDD B3_DNA 130 231 IPR003340 GO:0003677
Aed1g2493 609 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Aed1g2493 609 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed1g2493 609 PANTHER AUXIN RESPONSE FACTOR 16 18 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2493 Aed-Chr1 20649504 20653122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2493 20 595 B3 DNA Binding Superfamily AT4G30080 56.229 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed1g2493 B3 2.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2493 - - gmx:100803053 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0406 8 3361313 3367049 Aed1g2493 1 20649504 20653122 ECH
Aed2g1849 2 23200831 23204436 Aed1g2493 1 20649504 20653122 ECH
Aed1g2493 1 20649504 20653122 Aed1g2493 1 20649504 20653122 ECH