Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2489 ATGGCGAAAGACGTTGAGGTTGCTGAGCGTGGCTCCTTCTCTGGGAAGGACTACCAGGACCCTCCACCAGCACCACTCATTGATGCTGAGGAGCTCACAAAGTGGTCCTTTTACAGGGCTCTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTCTACATTACTGTTCTCACAGTGATAGGGTACAAGCACCAGACTGACCTCAAGGAACATGGTGAGGTGTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATCAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGTGTCTTTGATCCGAGCTATCATGTACATAGTGGCTCAGTGCTTGGGTGCTATCTGTGGAGTTGGGTTGGTGAAGGCTTTCCAGAAGTCTTACTTCAACAAGTATGGTGGTGGGGCTAATTCCCTCGCTGAAGGGTACAGCACAGGTACTGGCTTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACTGGCACTGGCATCAACCCTGCTAGGAGTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATTGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCGTTCTACCACCAGTTCATCTTAAGAGCAGGTGCAGCTAAGGCCCTTGGATCATTCAGGAGTAACCCCCATAATTGA 864 0.5023 MAKDVEVAERGSFSGKDYQDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQTDLKEHGEVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYIVAQCLGAICGVGLVKAFQKSYFNKYGGGANSLAEGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPHN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2489 287 MobiDBLite consensus disorder prediction 1 24 - -
Aed1g2489 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Aed1g2489 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Aed1g2489 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Aed1g2489 287 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
Aed1g2489 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g2489 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2489 Aed-Chr1 20597775 20600728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2489 1 283 Major Intrinsic Protein MIP AT2G37170 84.806 4.06e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2489 K09872 - gmx:100817292 577.015