Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2476 ATGATGGGTTATCCTTCGGGATTCTATCTTTTTCTGCTTTTGTCCATTTGTGGGGTAGTTTTTTCTTTAGCTTTCCCAATTGAAGATCAGAAGAGAGATAGAATTACTCAGCTGCCAGGACAACCAAAGAATGTTGGGTTTGCTCAGTATTCAGGCTATGTGACTGTGAATGAGCAAAGTGGAAGAGCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGTCGTGGACCAAAGTCAAGGCCACTAGTGTTATGGCTCAATGGTGGTCCTGGATGTTCCTCAATTGCTTATGGTGCATCTGAGGAAATTGGTCCTTTTCGCATTAGGCCTGATGGCAAGTCACTTTACTTGAACCCTTATGCCTGGAACAATTTGGCAAATGTGCTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCATATTCCAATAAGACAGCAGATCTGTATACATTTGGTGACAAAAAAACAGCTGAAGATGCATATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCACAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTATGCAAAAAATAAGGGAATTAAGAATCCAGTTATAAATTTTAAGGGATTTATGGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGCTTGGTTTCAGATTCCACGTATAAGATGCTAAAAACTTCATGCAACTTTGGGTCCTCTTTGCATCCATCAGTGCAATGCATGGAGGCTCTCAGGGTTGCAACTTTGGAGCAGGGAAACATTGATCCATATAGCGTTTATACACAGCCTTGTAACAATACAGCATCACTCAGACGTGGCTTGAAGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCTGAAGTTCAGAAGGCATTTCATGCCAATGTAACTGGGATTCCTTATGCATGGAAAGCATGCAGTGATATAGTTGGGAACTATTGGACTGATTCTCCATTATCTATGCTTCCTATATATCAAGAACTTATTGGTGCTGGTCTCAGAATATGGGTCTACAGTGGAGACACTGATGCGGTGGTTCCAGTGACTGCTACTCGATATTCAATTGATGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGAATGATAATGGCAAGGTTGGTGGGTGGAGTCAAGTTTATAAAGGATTGACATTGGTTACAGTAAGAGGAGCTGGACATGAGGTTCCTCTTCATAGGCCACGCCAGGCTTTCATTCTTTTTAGGTCATTCTTGGAGAACAAGTCCATGCCATCCACAAGTTAG 1386 0.4156 MMGYPSGFYLFLLLSICGVVFSLAFPIEDQKRDRITQLPGQPKNVGFAQYSGYVTVNEQSGRALFYWLVEAPVSRGPKSRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKSLYLNPYAWNNLANVLFLDSPAGVGFSYSNKTADLYTFGDKKTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQIVYAKNKGIKNPVINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYKMLKTSCNFGSSLHPSVQCMEALRVATLEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKAFHANVTGIPYAWKACSDIVGNYWTDSPLSMLPIYQELIGAGLRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWNDNGKVGGWSQVYKGLTLVTVRGAGHEVPLHRPRQAFILFRSFLENKSMPSTS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Aed1g2476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Aed1g2476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Aed1g2476 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Aed1g2476 461 SUPERFAMILY alpha/beta-Hydrolases 30 457 IPR029058 -
Aed1g2476 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 459 IPR001563 GO:0004185|GO:0006508
Aed1g2476 461 PANTHER CARBOXYPEPTIDASE 26 459 - -
Aed1g2476 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Aed1g2476 461 Gene3D - 360 453 - -
Aed1g2476 461 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Aed1g2476 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Aed1g2476 461 Gene3D - 313 349 - -
Aed1g2476 461 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2476 Aed-Chr1 20488823 20493254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2476 342 457 Calmodulin-binding Proteins AT2G22960 29.915 5.31e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2476 K16297 - gmx:100812000 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2476 1 20488823 20493254 Aed1g2476 1 20488823 20493254 ECH