Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2452 ATGGGGGATTCCGAGAATCAGCAGTTTGCAATTTCTCCTCAACAAAGTGAGGATGGTGCTTGTTTATCTGCAATGTTGCTTTGCACTAATCTAGTGTACCCTGCAGTCCTAAATGCTGCTATTGAGCTTAACTTGTTTGAGATCATAGCTAAGGCAACTCCACCAGGTTCTTTTATGTCATCCCATGAAATTGCTTCTAAGCTCCCAACCCAACAACACACTGACTTGCCTAATAGGCTTGATCGAATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTCACTACTTCCACACGCACCACACAGCATGCTGATGATGGTTCAACTGAGTCTGAGACACTTTATGGACTCTCACAAGTTGGAAACTACTTTGTCCCTGACGGAAATAGGGGCTACTTGGCCTCATTCACCACTTTTGTCTGTTATCCACCACTCTTACATGTTTGGATGAACTTCAAGGAAGCAGTGGTTGATGCAGACATTGATTTGTTCAAGAAACTTCATGGAGTAACAGCGTACCAGTACATGGAAAAGGATACAAAAATGAACCAAATCTTTAACAAGTCAATGGCCGACGTCTGTGCAACAGAGATGAATAGAATACTTGAAACATATGCTGGATTTGAAGGAATATCAACACTGGTTGACGTAGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGACGCCATAATACTAAAGGCTGTATGCCACAATTGGTCAGATGAAAAATGTTTAGAATTTCTAAGCAATTGTCACAAAGCACTGTCTCCAAATGGAAAGCTGATTGTGGTGGAGTTCATACTGCCAGAAGAACCAGAACCAACTGAAGAATCTCAGCTTGTTTCCACTCTGGACAACCTCATGTTTATCACGGTTGGTGGAAGGGAGAGAACTCAGAAACAATATGAGAATTTAAGCAAGCTCTCAGGATTTTCAAAATTTCAAGTTGCTTGTCGTGCCTTCTCTAGTTTGGGAGTCATGGAATTTTACAAATAG 996 0.4177 MGDSENQQFAISPQQSEDGACLSAMLLCTNLVYPAVLNAAIELNLFEIIAKATPPGSFMSSHEIASKLPTQQHTDLPNRLDRMLRLLASYSVLTTSTRTTQHADDGSTESETLYGLSQVGNYFVPDGNRGYLASFTTFVCYPPLLHVWMNFKEAVVDADIDLFKKLHGVTAYQYMEKDTKMNQIFNKSMADVCATEMNRILETYAGFEGISTLVDVGGDMFASVPQGDAIILKAVCHNWSDEKCLEFLSNCHKALSPNGKLIVVEFILPEEPEPTEESQLVSTLDNLMFITVGGRERTQKQYENLSKLSGFSKFQVACRAFSSLGVMEFYK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2452 331 PIRSF O-mtase 1 218 IPR016461 GO:0008168
Aed1g2452 331 PIRSF O-mtase 216 331 IPR016461 GO:0008168
Aed1g2452 331 Pfam O-methyltransferase domain 216 312 IPR001077 GO:0008171
Aed1g2452 331 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 216 331 - -
Aed1g2452 331 Gene3D Vaccinia Virus protein VP39 218 331 IPR029063 -
Aed1g2452 331 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Aed1g2452 331 Gene3D Vaccinia Virus protein VP39 125 217 IPR029063 -
Aed1g2452 331 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 215 IPR016461 GO:0008168
Aed1g2452 331 Gene3D - 2 123 IPR036388 -
Aed1g2452 331 PANTHER O-METHYLTRANSFERASE 216 331 IPR016461 GO:0008168
Aed1g2452 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 328 IPR029063 -
Aed1g2452 331 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 4 218 - -
Aed1g2452 331 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 216 331 IPR016461 GO:0008168
Aed1g2452 331 PANTHER O-METHYLTRANSFERASE 4 218 IPR016461 GO:0008168
Aed1g2452 331 CDD AdoMet_MTases 190 268 - -
Aed1g2452 331 SUPERFAMILY "Winged helix" DNA-binding domain 17 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2452 Aed-Chr1 20337424 20339317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2452 1 331 Monolignol Biosynthesis Gene Families AT5G54160 38.503 9.24e-76 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2452 - - gmx:100787536 556.599