Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2449 ATGGAAGATTCAGATGAGGATGAGCTTTTGAATCTTAGCCTTTCAGTTGCTGCTGATAGGGAAAGGAAAAAGAAGGGAAAGACAATTAGGGAACACAACAACAGCAACGTTGTTGTTTCTATGAGTAGTAGTTGTAGTACTACTACTAGCTACCATGAAGGGAAGATCTTTAGGCTTCTTCAAATGAGGGAGCAGATGCTAAGAGTACAAGACCATAGGATGAGGAAAGGTGTTGTGGAAGACGGAAATGGCCTCCCTTTGATCCATTTGTTGCTCTCAACCGCCACTGCAGTTGATGACAACAACTTGGACTCATCCTTAGAGAATCTCACTGATTTATACCAAACAGTTTCCTTAAAAGGTGACTCAGTCCAACGCGTGGTGGCATATTTCGCTGATGGCTTAGCTGCAAGGCTTCTCACAAGAAAATCACCATTCTATGAGATGCTCATGGAGGAACCAACAACTGAGGAAGAGTTTCTTGCCTTCACAGATCTCTATAGGGTCTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCCATCTTGGAGGCCTTTGAGAGAGAGGAAGAGAGGAACAACCGTGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGTTTTCAATGGCCGTCTCTAATTCAGTCTCTTTCAGAGAAAGCAACAAGTGGAAACCGCATATCCCTCAGGATAACCGGGTTTGGGAAGAGCCTCAAGGAGCTTCAAGAAACCGAGTCTAGGTTGGTTAGCTTCTCAAAGGGTTTTGGAAGCCTTGTGTTTGAGTTCCAAGGGCTTCTTAGAGGGTCAAGGGTCATCAACCTAAGGAAGAAAAAGAACGAAACCGTGGCTGTAAGCTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCCTCCATTGTTGTGGTGGTGGAGCAAGAAGGTAGCAGGAGCCCTAGGAGCTTCTTGTCCAGGTTCACTGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTTGATGATTGTCTCCCACTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTAGGGAAAGAGATCAAAAGCATGCTCAACAATGATTTGGATGGTGGCGTGGACTGCCCCAAGTATGAGAGGATGGAAACATGGAAAGCGAGAATGGAGAATCATGGCTTTGTTGCCACCAAAATAAGCTCAAAGTCAGTGATTCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGCCCTCTCCAGTTTGAGGAAGAGGGAGGTGGGGGTTTCAGAGTTTCTGAAAGAGATGAAGGAAAGGCTCTCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAATCAGTCTCAGTCTGA 1413 0.4466 MEDSDEDELLNLSLSVAADRERKKKGKTIREHNNSNVVVSMSSSCSTTTSYHEGKIFRLLQMREQMLRVQDHRMRKGVVEDGNGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLKGDSVQRVVAYFADGLAARLLTRKSPFYEMLMEEPTTEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEREEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKSLKELQETESRLVSFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVSLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDLDGGVDCPKYERMETWKARMENHGFVATKISSKSVIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGKALSLGWQNRFLLTVSAWQSVSV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2449 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 466 IPR005202 -
Aed1g2449 470 Pfam GRAS domain family 87 466 IPR005202 -
Aed1g2449 470 Coils Coil 357 377 - -
Aed1g2449 470 PANTHER OSJNBA0084A10.13 PROTEIN 8 466 - -
Aed1g2449 470 ProSiteProfiles GRAS family profile. 78 466 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2449 Aed-Chr1 20318940 20320352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2449 95 465 GRAS Transcription Factor Family AT3G54220 35.526 9.23e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g2449 GRAS 1.2e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2449 - - gmx:100813979 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0817 7 6251192 6252586 Aed1g2449 1 20318940 20320352 PCT