Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2447 ATGGATCCAAAAGGAAGCTTATGTGCTAACAACTGCACAAGGTCCTCAGATCCTCCTCCCTCTTTCTATGGTGTCAGGATTGAATCACCTTTCAAAGAATTCATCCCACCCTTGGCCTCTCCTCCAACCCAATCTGTACTTCCAGGTGAATCTAACACAGATATTGAGATCCCTGACCAAGAAAATTGTCCACTGAGTGACTCATCACATACCAGTAAACTCCAAGATTGGAATCCAAGTGTGATGTTGAACAACCTTTCCTTCCTTGAAGAAAAGATTCACCAGCTTCGGGATCTAGTGCATTTGATTGTTAATAAAAAGTGCCAACCCTTTGGACAACCTCATGAACTAGTGACTCAAGAACAGCAGCTCATTACAGCTGATCTTACGTCAATTATTGTTCAACTGATTTCTACTGCTGGTAGTCTTCTTCCCTCTGTTAGGCACACACTCACAAACACTAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGACCCAAGTAGTGGTATTAGTATTAAGCCACAAAGTGATAGTGGAAATAAACTGTTTGATCAGTCCACTCAGAATGATCTACCAAATAATTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGCCAAAAGATGAAGACGGGGATGAGGGAGAGAATCTACCACCTGGTTCCTACGAGATTTTGCAGTTAGAAAAAGAAGAAATCCTCGCCCCTCACACACATTTCTGTACAATATGTGGGAAGGGATTCAAGAGGGATGCGAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAAGCCGGGTCCGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTCTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACTAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGTAGGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGAAACCAAAGGAGTGGCTGAGCCACCTGATATGCAGAACAGCGAAAGCAACAATAAGGTAGAAAGTGCTATTAACTTCTGTGTTGGATCAAATCCTTCAAGTGAAAATGTGGTTCAAAGCATGATGGATATGAAAGGTAATAATATTGATGATCCCATGAATTATTTCTCATCGTTGAACTTCGAAGGCTATAACTTTGGGGCGTTTAATGAATTCTCCCAACCTCCATTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCTACTAAATTTGGTGGCAGTGAGTCAATTTCTGACAATCTGTAG 1512 0.422 MDPKGSLCANNCTRSSDPPPSFYGVRIESPFKEFIPPLASPPTQSVLPGESNTDIEIPDQENCPLSDSSHTSKLQDWNPSVMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVGQLDQLHGINLPFGSDPSSGISIKPQSDSGNKLFDQSTQNDLPNNCEMEQNYNMEEHEPKDEDGDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEAGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGVAEPPDMQNSESNNKVESAINFCVGSNPSSENVVQSMMDMKGNNIDDPMNYFSSLNFEGYNFGAFNEFSQPPFEDSEGSFSFLMSGSFNYATKFGGSESISDNL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2447 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 48 486 - -
Aed1g2447 503 SUPERFAMILY beta-beta-alpha zinc fingers 247 274 IPR036236 -
Aed1g2447 503 SMART c2h2final6 298 331 IPR013087 -
Aed1g2447 503 SMART c2h2final6 249 271 IPR013087 -
Aed1g2447 503 SMART c2h2final6 336 358 IPR013087 -
Aed1g2447 503 MobiDBLite consensus disorder prediction 175 204 - -
Aed1g2447 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Aed1g2447 503 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Aed1g2447 503 Gene3D Classic Zinc Finger 233 303 - -
Aed1g2447 503 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 48 486 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2447 Aed-Chr1 20298902 20300413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2447 218 501 C2H2 Transcription Factor Family AT1G34370 68.621 1.73e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2447 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2447 - - gmx:100170687 930.628