Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2435 ATGAATCCATGCCATTTGGAGAGATCATCATCAATTGATATGGAATCATGTGTGCCTCCAGGGTTTAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACAAGCTAAAAATCGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGACATACAAGGTATATATACCAAAGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCATCACAGACAAGGTTTTGACCCATATTGGTGCAGTAGTAGTCAACAACAACACTTTTTCAGAGATCAAAGCTATGCATCAAGACCCTTATCAATTGCTGACATTTTGAATGAAACAAATGTGCCTCATCACACTGCTGAAGGTACAAGTTTTAGTACTAGTCACCCCTTCAGCTCAGATGATCATCAGCAACAACAACACTTGAATATTCTATCAAACCAAACTGCTCTTATTATGGACAAACAACTCATTGAGCTTCCTCAGCTAGATGATAGTCCCACTGCAAGTTTAGCAATGATCAAAGAATGTAACCAACAACAACAACAACACCATGGCCTAACAAATGAGGAGTATTGCAGTGATATTGAAAGGAGCAATAACAGTACTGCACAAGGCATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCACAATTGATGAGTGATAACAACACAGCTTATTTTTCACATAATCCAAACTTGCCCTTGATGATGCCCCAACAACATAATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTTCCTGATTCATAA 813 0.3936 MNPCHLERSSSIDMESCVPPGFRFHPTEEELVGYYLKRKINKLKIDLDVIVEVDLYKIEPWDIQGIYTKEEGWVVCRAFRKPSPSHHRQGFDPYWCSSSQQQHFFRDQSYASRPLSIADILNETNVPHHTAEGTSFSTSHPFSSDDHQQQQHLNILSNQTALIMDKQLIELPQLDDSPTASLAMIKECNQQQQQHHGLTNEEYCSDIERSNNSTAQGIDWKSLDNLFGSQLMSDNNTAYFSHNPNLPLMMPQQHNNHDQASHILGCFPDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2435 270 SUPERFAMILY NAC domain 5 77 IPR036093 GO:0003677|GO:0006355
Aed1g2435 270 ProSiteProfiles NAC domain profile. 18 159 IPR003441 GO:0003677|GO:0006355
Aed1g2435 270 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 65 - -
Aed1g2435 270 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 68 243 - -
Aed1g2435 270 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 16 65 - -
Aed1g2435 270 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 68 243 - -
Aed1g2435 270 Pfam No apical meristem (NAM) protein 19 103 IPR003441 GO:0003677|GO:0006355
Aed1g2435 270 Gene3D NAC domain 27 110 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2435 Aed-Chr1 20231090 20235136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2435 14 65 NAC Transcription Factor Family AT1G71930 78.846 1.16e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed1g2435 NAM 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2435 - - gmx:100811057 286.96