Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2428 ATGCCAACACCAACGGGAGACTCTTCTAACACCAATCCTCATCCCAAACACACCCATCAAGAATCGCGTGACCTCTCTCCTTTTTTGTCTTCTTCTTACCCCATCACCCTTAAGTTCATGGACGTGGCATACCGATTGAAGATAGAGGACAAACAAAAAAACGGAGGGAGCCTCAAGAGATTTTTCACGCCGTCCGATCAAGGAGCATCGCAGGAGCGAACTATTTTAAAAGGAGTAACGGGGATAGCACACCCGGGAGAGATCTTAGCGGTCCTGGGCCCATCAGGGAGCGGAAAATCGACGCTCCTCAACGCGCTCGCAGGGAGACTCCATGGACACGGCCTCACTGGAACAATCCTCGCCAACTCAAGCAAACTCACCAAAACAGTTCTCCGCCGAACCGGCTTCGTTACACAGGACGATATCCTCTACCCTCACTTGACGGTTCGCGAGACGCTCGTGTTCTGCGCCATGCTGCGCCTCCCGCGCGCGCTACCGCGCGCGGCGAAGGTCGCGGCGGCGGAGGCGGCGATCTCGGAACTAGGGCTGGGGAAGTGCGAGAACACGATAATCGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGCGGAAGCGCGTGAGCATCGCGCACGAGATGCTTGTGGATCCTTCCCTCCTCATACTGGACGAGCCTACCTCCGGATTGGACTCCACGGCGGCGCACCGCCTCGTCGTGACACTCGGCTCCCTCGCGAAGAAGGGCAAAACGGTAATTACATCGGTGCACCAACCTTCGAGCCGCGTCTACCAGAAGTTCGATAAAGTTGTGGTGCTATCGGAAGGACAGTGTATGTACTTCGGCAAAGGAAGCGACGCCATGCAGTACTTTCAGTCGGTTGGGTTCGCGCCGTCGTTTCCGATGAATCCGGCGGATTTTCTGCTCGATCTCGCTAACGGTCCCGCTTTCATTAATCAAGCCCAATTTTACTTGCAAACTTTTAATTATTAG 990 0.5556 MPTPTGDSSNTNPHPKHTHQESRDLSPFLSSSYPITLKFMDVAYRLKIEDKQKNGGSLKRFFTPSDQGASQERTILKGVTGIAHPGEILAVLGPSGSGKSTLLNALAGRLHGHGLTGTILANSSKLTKTVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRALPRAAKVAAAEAAISELGLGKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVVTLGSLAKKGKTVITSVHQPSSRVYQKFDKVVVLSEGQCMYFGKGSDAMQYFQSVGFAPSFPMNPADFLLDLANGPAFINQAQFYLQTFNY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2428 329 Coils Coil 324 329 - -
Aed1g2428 329 Gene3D - 67 293 IPR027417 -
Aed1g2428 329 CDD ABCG_EPDR 60 281 - -
Aed1g2428 329 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 7 318 - -
Aed1g2428 329 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 299 IPR003439 GO:0005524
Aed1g2428 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 293 IPR027417 -
Aed1g2428 329 Pfam ABC-2 type transporter 256 315 IPR043926 GO:0140359
Aed1g2428 329 Pfam ABC transporter 76 227 IPR003439 GO:0005524
Aed1g2428 329 MobiDBLite consensus disorder prediction 1 27 - -
Aed1g2428 329 SMART AAA_5 85 276 IPR003593 -
Aed1g2428 329 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2428 Aed-Chr1 20180340 20181919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2428 86 281 Calmodulin-binding Proteins AT2G36910 32.353 1.01e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2428 K05681 - gmx:100812367 543.502