Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2420 ATGGTTATCCAACATCACTGTCCTGTAATTGTCATGCTTACTAACTTGCTCGACCATGATGGGATTGATGAGTTGTGCGGAGATTATTTTCAAACGCCAAAGGACGGAACTAGAGATTTTGGTCAAAACATCTCTATTGTCGGGAAAGGGGTCAAAACTACTGAGACTTCACCGCTGGTGTTGAGCCATTTCGAGGTCAACCATACAGATCAGGTAGAAGGTACACCACTATCTGTTTTGCATATTCATCACACTACATGGCCTGACCATGGAGTCCCCGATGATACATATCCTGTTCGTGAAATTTTTAAGAGATTATATCATTTAGAACCAAACCTTGGCCCCATAGTGGTGCACTGCAGTGCTGGTATTGGTAGAACTGGAACATACTGCACCATTCACAACACACTTCAGAGAATACTTTCTGGTGATATGTCTGCTCTAGATCTTGCTCACACAGTGGCTACGTTCAGGACTCAGCGTCTTAGAATGGTTCAGACTGAGGCTCAGTACAAATTCTGCTACCAAGCTATCATAGAAGAACTGGAAGACCTTTTATCTCAACAGTAA 570 0.4298 MVIQHHCPVIVMLTNLLDHDGIDELCGDYFQTPKDGTRDFGQNISIVGKGVKTTETSPLVLSHFEVNHTDQVEGTPLSVLHIHHTTWPDHGVPDDTYPVREIFKRLYHLEPNLGPIVVHCSAGIGRTGTYCTIHNTLQRILSGDMSALDLAHTVATFRTQRLRMVQTEAQYKFCYQAIIEELEDLLSQQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2420 189 ProSiteProfiles PTP type protein phosphatase domain profile. 1 181 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 Gene3D Protein tyrosine phosphatase superfamily 1 189 IPR029021 -
Aed1g2420 189 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 1 188 - -
Aed1g2420 189 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 100 172 IPR000387 GO:0016311|GO:0016791
Aed1g2420 189 ProSitePatterns Tyrosine specific protein phosphatases active site. 118 128 IPR016130 GO:0016311|GO:0016791
Aed1g2420 189 Pfam Protein-tyrosine phosphatase 1 180 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 SMART ptp_7 78 180 IPR003595 -
Aed1g2420 189 SMART PTPc_3 1 183 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 PRINTS Protein tyrosine phosphatase signature 148 163 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 PRINTS Protein tyrosine phosphatase signature 115 133 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 PRINTS Protein tyrosine phosphatase signature 77 94 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 PRINTS Protein tyrosine phosphatase signature 164 174 IPR000242 GO:0004725|GO:0006470
Aed1g2420 189 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 184 IPR029021 -
Aed1g2420 189 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2420 Aed-Chr1 20100485 20101987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2420 1 185 Protein tyrosine phosphatase (PTP) family AT1G71860 65.946 6.10e-82 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2420 - - pvu:PHAVU_007G087900g 257.299