Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2418 ATGGCCGGAAACTCCGCCGCCACTTCCTCCTCCGCATTATCTCCCGAGAAATTCAATTTCTCGCCCGATAACCCCTCCCGAATCACCCTCACTTCGGATCAGGTCAACCACTGCACTGAAGCCATCAACCTTCTGAAGGAGAAACTCCACGCTCCTCACGTGATCGCTCAGGAGTTCGCACTCTTGCAGGCGAACAGGATCACGCCGAGTGAGATGAGGAGAAGATGCACCGTCGCTCTCGACGCCGCCAATTTGAGCAAAAATCGATACACGGACGTTTTGCCATTTGACAAGAACAGGGTTGTTCTCAAATCGAGTACGGATTACAGACCTGAAGCACAGGGCTATATCAATGCAAGCCTTGTCTCGACCTCCTCCGCTGGAAATGTGTCCCAGTTTATAGCCACACAAGGTCCACTTCCACATACTTATGAAGATTTCTGGGAAATGATTATCCAATATCACTGCCCTACGATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAAGCTGAGGATGGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGTAAACACTACTGAAACTTCACTGGTGCTGCGCCATTTGGAGGTGAACCATAGCGAGGTAGAAGATGCGCCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAATGATACATTTTCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCGCCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCGGCTGTAGATATTGCTAAAACAATAGCCATGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACGCTTTCTGCTATAAAGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGTAA 1002 0.4581 MAGNSAATSSSALSPEKFNFSPDNPSRITLTSDQVNHCTEAINLLKEKLHAPHVIAQEFALLQANRITPSEMRRRCTVALDAANLSKNRYTDVLPFDKNRVVLKSSTDYRPEAQGYINASLVSTSSAGNVSQFIATQGPLPHTYEDFWEMIIQYHCPTIIMLTRLVDNYKMVKCGDYFQAEDGPREVGNISIIGKWVNTTETSLVLRHLEVNHSEVEDAPLSVLHIQYPEWPDHGVPNDTFSVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIAKTIAMFRSQRIGMVQTQDQYAFCYKAIIDELEDLVSQQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2418 333 CDD PTPc_plant_PTP1 116 319 - -
Aed1g2418 333 Pfam Protein-tyrosine phosphatase 84 323 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 14 332 - -
Aed1g2418 333 PRINTS Protein tyrosine phosphatase signature 308 318 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 PRINTS Protein tyrosine phosphatase signature 221 238 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 PRINTS Protein tyrosine phosphatase signature 259 277 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 PRINTS Protein tyrosine phosphatase signature 115 122 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 PRINTS Protein tyrosine phosphatase signature 133 153 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 PRINTS Protein tyrosine phosphatase signature 292 307 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 MobiDBLite consensus disorder prediction 1 25 - -
Aed1g2418 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 244 316 IPR000387 GO:0016311|GO:0016791
Aed1g2418 333 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 14 332 - -
Aed1g2418 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 327 IPR029021 -
Aed1g2418 333 SMART ptp_7 222 324 IPR003595 -
Aed1g2418 333 ProSiteProfiles PTP type protein phosphatase domain profile. 55 325 IPR000242 GO:0004725|GO:0006470
Aed1g2418 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Aed1g2418 333 Gene3D Protein tyrosine phosphatase superfamily 28 327 IPR029021 -
Aed1g2418 333 SMART PTPc_3 54 327 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2418 Aed-Chr1 20092011 20096051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2418 33 331 Protein tyrosine phosphatase (PTP) family AT1G71860 69.231 2.68e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2418 - - gmx:548044 625.935