Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2413 ATGGAGAGAAAGTTTATGGCTTTAGGTTTCATTTGGTGGGTGGTGTTTGTTCATCCACTATGCCTGATTTCTGCTAACATGGAAGGAGATGCTTTGCATAGTCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGATCCTACCCTTGTCAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGGAATGCTGCTTTGTCTGGTCAACTTGTTCCGCAGCTTGGTCAGCTCAAGAATTTGCAGTATTTGGAGCTTTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAACCATTTCACTGGCCCAATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTTCGGCTTAACAACAACAGCTTGTCAGGTCCTATTCCCATGTCACTGACTAATATTACGGCTCTCCAAGTTCTGGATTTGTCTAATAATCATCTATCAGGAGTAGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTGCAAACAACTTGGATCTATGTGGACCTGTCACTGGGCACCCCTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCTCCACCTCCAATGTCTGCCCCAGGAGGTAATGGTGCCACTGGAGCAATAGCAGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTTCATCTGGGACAGCTTAAGAGGTTTTCACTACGAGAACTGCAAGTTGCAACAGATAGTTTCAGCAATAAGAACATTCTTGGGAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTGGCTGTGAAAAGGTTGAAAGAGGAACGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTCCGGCTACGTGGGTTCTGTATGACACCAACAGAAAGGCTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAGGTAGATCTTATGTAAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACAAAAAAATTATATTGAAGCTGAGGTAGAACAGTTAATCCAGGTCGCACTGCTCTGCACACAAGGTTCCCCGATGGACCGACCTAAGATGTCAGAAGTCGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTCCGGCAGGAGGTAGAGCTGGCCCCTCATCCTAATTCCGATTGGATAGTTGACTCGACCGAAAATCTGCATGCAGTAGAGTTATCTGGTCCAAGGTGA 1491 0.452 MERKFMALGFIWWVVFVHPLCLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNHFTGPIPDSLGKLSKLRFLRLNNNSLSGPIPMSLTNITALQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPMSAPGGNGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRGRSYVKGLLKEKKLEMLVDPDLQKNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2413 496 Gene3D Phosphorylase Kinase; domain 1 270 375 - -
Aed1g2413 496 Gene3D Transferase(Phosphotransferase) domain 1 376 467 - -
Aed1g2413 496 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 392 496 IPR031048 GO:0004675|GO:0005102|GO:0006468
Aed1g2413 496 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 13 390 IPR031048 GO:0004675|GO:0005102|GO:0006468
Aed1g2413 496 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Aed1g2413 496 ProSiteProfiles Protein kinase domain profile. 301 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2413 496 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 392 496 - -
Aed1g2413 496 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 390 - -
Aed1g2413 496 Pfam Protein tyrosine and serine/threonine kinase 304 398 IPR001245 GO:0004672|GO:0006468
Aed1g2413 496 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515
Aed1g2413 496 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515
Aed1g2413 496 SUPERFAMILY Protein kinase-like (PK-like) 279 392 IPR011009 -
Aed1g2413 496 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Aed1g2413 496 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Aed1g2413 496 SUPERFAMILY L domain-like 28 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2413 Aed-Chr1 20054317 20060795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2413 392 496 Receptor kinase-like Gene Family AT1G34210 88.571 1.52e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aed1g2413 Pkinase 9.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2413 K13418 - gmx:100789884 680.248