Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2403 ATGGCCACCCCGCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATCGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTTTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGGGTCGTGGTGGTCCTGGAATGACAACAAATGTTGACACTCAGAAACAAGTTGGTGGCCCACCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCATCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGTCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTTGGAATGGTGACTTCACAAGTGTTACAAATGCCAAACCTTAGGCTGTCTTCTGATCAAACCTCACAGTCTTTAATGAATGAAGGCCAGCTGGGTCAGCCACCATTGGTTCAAACTCTGTCAGGGCTTCTTCCTCATGGGCAGGCCAAGTTGCCGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGGCTCTTAATCAATTAACTGCACATCCAAAGCCTCCAGTGCAGACTCGGATTCCCCTTCAGCAACATCCAAACAATCTTGTACTGCCAGGAACATTGTCAGGGCAATCTAATTTAATGCTTCCTTCTGCTCGTCCTCCTGGTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCGGCAACTTCAACTGCTCTGAACCAGCAAATGCATGCCTCTTTGCTACATCATTCTGTACATGCTGGAAACTCAACTATAGGGCATAATATTCAAATGGTTCATCCAGACGCCAACTTTCAGCCTGGCCCCTCCATGACATCAGCTAATTCTCAGTTATTGAGTAAAGGCGATAAATCTTCTAAAGTTCTTGAGGATTTGAATTGGGCCAAGAGGACTAATACATATTCAAACATGCCTTTGGGAGTAGTAGAGAAAACAAACATGGTTCGTGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTCATGAAATTGGATGAGGGAAGGAGCACCCGTCTTTCTGCAGGGATTTCAGACATGCCTGTAACCGATGGATCATCTCATGTCTTTGGAAGAAACTCATTACCTGTACATGCAGCTCCTAAAGCAGAAGGGAAATCCTCTGAGCAACAATCTTCTCAGCTTCCAGCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCTTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATACAGCCCTCATAG 1659 0.4557 MATPQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDTQKQVGGPPVHGEAVQHQPIGLHIAITAASVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELSRQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLSSDQTSQSLMNEGQLGQPPLVQTLSGLLPHGQAKLPSGLTPYAQEGQVNTIPHNPLALNQLTAHPKPPVQTRIPLQQHPNNLVLPGTLSGQSNLMLPSARPPGLGSLSVRPPIQPATSTALNQQMHASLLHHSVHAGNSTIGHNIQMVHPDANFQPGPSMTSANSQLLSKGDKSSKVLEDLNWAKRTNTYSNMPLGVVEKTNMVRDSSESFTRPSKVMKLDEGRSTRLSAGISDMPVTDGSSHVFGRNSLPVHAAPKAEGKSSEQQSSQLPADVESVLLQQVLNLTPEQLSSLPPDQQQQVIQLQQALRRDQIQPS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2403 552 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 547 - -
Aed1g2403 552 Pfam Transcription termination and cleavage factor C-terminal 514 546 IPR026896 GO:0031124
Aed1g2403 552 MobiDBLite consensus disorder prediction 85 121 - -
Aed1g2403 552 MobiDBLite consensus disorder prediction 458 484 - -
Aed1g2403 552 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 547 - -
Aed1g2403 552 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Aed1g2403 552 Gene3D - 2 116 IPR012677 -
Aed1g2403 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Aed1g2403 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Aed1g2403 552 Gene3D - 507 550 IPR038192 -
Aed1g2403 552 SMART rrm1_1 10 83 IPR000504 GO:0003723
Aed1g2403 552 CDD RRM_CSTF2_CSTF2T 11 85 - -
Aed1g2403 552 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Aed1g2403 552 Gene3D - 151 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2403 Aed-Chr1 19994408 20000589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2403 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 3.00e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2403 K14407 - gmx:100806489 936.791