Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2393 ATGGCGGCTGCGATTTCTGCACCGATGAGTCAGTCTGTGGCGGCGGCGGGTTCAGTGATGGCTCCGGCAGCCGCATTGGGCGGAGGACCCTTTGCGCATGCGTCGCTGTACGTGGGCGATCTCGAGGGGAATGTTAACGAGGAGCAACTTTATGATCTGTTCGGTCAGGTTGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGGCCAAGCGATCCTCTCTTGGTTACGCCTATGTCAACTTTGCCAACGCTCAGGACGCATCCAATGCCATGGAACTGCTGAACTTCACTCCTCTGAATGGAAAACCTATTCGAATAATGTTTTCCCAGCGTGATCCAAGCATTCGGAAAAGTGGACATGGGAATGTGTTCATTAAGAATCTGGATACATCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCACTGTCCTTTCCTGTAAGGTGGCTCTTGACAGCAATGGCCAGTCAAAAGGGTATGGTTTTGTTCAGTTTGACAGTGATGAGGCTGCCCAGAATGCAATAAAACGGTTGAACGGCATGTTGATAAATGATAAACAAGTTTACGTTGGACTCTTTATTCGGCGCCAGGAAAGGGCAGGGACAAATGGATCACCCAAGTTCACTAATGTATATGTGAAAAATTTGTCTGAAACATATACTGACGATGACTTGGAGAAGCTATTTGGCCCCCTTGGTACAATAACCAGTGCAACAGTTATGAAAGATGTGAATGGGAAGTCTAGATGTTTTGGCTTTGTCAATTTCCAGAATCCAGATTCAGCGGCTGCTGCAGTTGAGAGGTTAAATGGAACTACTATCAACGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAAGTAGAAAGAGAGGCTGAGTTGAAAGCGAAAATTGAGCAGGAGAGAAATAGTAGATATGAAAAATTACAAGGTGCTAACTTGTACCTGAAAAATCTTGATGACAACTTCAGCGATGAGAAGTTGAACGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGTTGAATGAAATGAATGGCAAGTTGATTGGACGGAAGCCTTTGTATGTTGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCTCATCTACAGGCTCAGTTTGCTCACATCCGAGCACCTGGTGGAATGACACCTCTGCCTGCTGGTATTCCTGTCTATCATCCGGGGGCACCCAGACTTGCCCCTCAACAAATGTATTATGGTCAAGGCACACCTGGCTTCATACCACCACAACCTGCTGGATTTTCTTACCAGCAGCAACTCATGCCTGGAATGCGGCCCGGTGTTCCCAATTTCATTATGCCTTACCACCTTCAGAGGCAGGGTCAGCCTGGGCAGAGGACTGGTGTTCGAAGAGGTGGAAACATCCAACAGGTGCAACAAAATCAGATGTTACACCATAACCCCAATCAAGGGTTTAGATACATGCCTAATGGTCGAAATGGTGTCGATCCATCATCAGTTCCTCACGGTCTTATGAGTCCAATGATGCCTATGCCATTTGATGGTTCTGGAGTCACTTCAGCTCCCGCTGATAATCAGCACCCTGGAGTAGGGTCTACCACACTTGCTTCGGCTCTTGCTTCTGCTACCCCTGACCATCAGCACATGATGTTGGGTGAACATCTATATCCCCTTGTGGAACGCCTCGCACCAAACCAATATACTGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTGATCAATCTCATTGAATCTCCGGAGGATTTGAAGATAAAGGTGTCGGAGGCAATGCAGGTCCTGCGTGATGCATCTGGTTCTGAAGTTGCTAGTTGA 1848 0.4697 MAAAISAPMSQSVAAAGSVMAPAAALGGGPFAHASLYVGDLEGNVNEEQLYDLFGQVAQIVSIRVCRDQAKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSNGQSKGYGFVQFDSDEAAQNAIKRLNGMLINDKQVYVGLFIRRQERAGTNGSPKFTNVYVKNLSETYTDDDLEKLFGPLGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINDDKVLYVGRAQRKVEREAELKAKIEQERNSRYEKLQGANLYLKNLDDNFSDEKLNDLFSEFGTITSCKLNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAHIRAPGGMTPLPAGIPVYHPGAPRLAPQQMYYGQGTPGFIPPQPAGFSYQQQLMPGMRPGVPNFIMPYHLQRQGQPGQRTGVRRGGNIQQVQQNQMLHHNPNQGFRYMPNGRNGVDPSSVPHGLMSPMMPMPFDGSGVTSAPADNQHPGVGSTTLASALASATPDHQHMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKIKVSEAMQVLRDASGSEVAS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2393 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Aed1g2393 615 CDD RRM3_I_PABPs 212 292 - -
Aed1g2393 615 SMART poly_2 544 608 IPR002004 GO:0003723
Aed1g2393 615 Pfam Poly-adenylate binding protein, unique domain 540 605 IPR002004 GO:0003723
Aed1g2393 615 CDD RRM1_I_PABPs 35 114 - -
Aed1g2393 615 PANTHER RNA BINDING PROTEIN 30 348 - -
Aed1g2393 615 PANTHER RNA BINDING PROTEIN 348 610 - -
Aed1g2393 615 SMART rrm2_1 35 108 IPR003954 GO:0003676
Aed1g2393 615 SMART rrm2_1 123 195 IPR003954 GO:0003676
Aed1g2393 615 SMART rrm2_1 214 286 IPR003954 GO:0003676
Aed1g2393 615 Gene3D - 530 609 - -
Aed1g2393 615 SUPERFAMILY RNA-binding domain, RBD 212 372 IPR035979 GO:0003676
Aed1g2393 615 Gene3D - 206 310 IPR012677 -
Aed1g2393 615 PANTHER POLYADENYLATE-BINDING PROTEIN 30 348 - -
Aed1g2393 615 PANTHER POLYADENYLATE-BINDING PROTEIN 348 610 - -
Aed1g2393 615 SUPERFAMILY RNA-binding domain, RBD 34 202 IPR035979 GO:0003676
Aed1g2393 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Aed1g2393 615 Gene3D - 123 196 IPR012677 -
Aed1g2393 615 CDD RRM2_I_PABPs 120 195 IPR045305 -
Aed1g2393 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 350 IPR000504 GO:0003723
Aed1g2393 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 282 IPR000504 GO:0003723
Aed1g2393 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Aed1g2393 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Aed1g2393 615 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 532 610 IPR002004 GO:0003723
Aed1g2393 615 Coils Coil 286 309 - -
Aed1g2393 615 Gene3D - 31 122 IPR012677 -
Aed1g2393 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Aed1g2393 615 SUPERFAMILY PABC (PABP) domain 480 609 IPR036053 GO:0003723
Aed1g2393 615 SMART rrm1_1 318 364 IPR000504 GO:0003723
Aed1g2393 615 SMART rrm1_1 123 195 IPR000504 GO:0003723
Aed1g2393 615 SMART rrm1_1 214 287 IPR000504 GO:0003723
Aed1g2393 615 SMART rrm1_1 35 108 IPR000504 GO:0003723
Aed1g2393 615 Gene3D - 311 382 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2393 Aed-Chr1 19933943 19938398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2393 33 609 Eukaryotic Initiation Factors Gene Family AT1G71770 56.006 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2393 K13126 - gmx:100783163 1086.63