Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2388 | ATGGAAAACATTGTTCCCCACTGTGTTACCACTTTGTTGTTTTCCTTGCTACTCTTCTGCCTCACCCTGACAAAGATAGGAGTCAGTTGTCTCTCCCCTGATGGACAAGCCCTTCTTTCTCTTCTGCCTGCAGCAAAATCATCACCTTTTGTTCTCTCCTCATGGAACCCATCAAGTTCAACACCTTGTTCATGGAAAGGCATCACTTGCTCCCCACAAGGTAGAGTTATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGCTTCAACTTCTCAACCTCTCTTCCACCAATGTCTCTGGCTCCATCCCACCCTCTTTTGGTCAACTCTCCCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGGCTATCTTCACTTCAATTCCTTTACTTGAACTCAAACAGATTGACAGGAAGCATTCCTCAACACCTTTCCAATCTAACTTCACTTGAAGTTCTTTGCTTCCAAGACAATCTTCTCAACGGTTCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGAAATCCATATCTCAGTTCTATCCCAGAAGAGATTTTCAGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAAGGTTGCCATCAAGTGTTGCAAATTGCCAATCTTTAGTGAGGCTGAGGGTTGGAGAAAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTTGTGTTCCTTGACTTGTACATGAATCATTTCTCTGGAAGCATACCGGTGGAGATTGCCAATATCACAGTTCTTGAGCTGTTAGATGTGCACAACAACTACCTCACCGGGGAAATTCCATCTGTCATTGGGGAGCTTGAAAATTTGGAGCAGCTTGACCTCAGTAAAAACAGATTGACAGGAGAAATTCCAGATTCAGTGACTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAATCTGCTTTATGGAGGAATCAAGGTTCTGGGGTCTCTCACTAGCCTCACTTCTCTCAATATCTCCTACAACAACTTCTCAGGTCCTATCCCAATAACTCCATTCTTCAGAACTCTATCTTCCAATTCATATCTTCAGAACCCCCAGCTTTGTCAATCCATGGATGGGACTACATGTTCTTCAAGCCTGATTCGAAAAAATGGTTTGAAATCCGCAAAAACCATAGCTTTGATCATGGTCATTCTAGCCTCGGTTACTATAATTGTCATTTCATCCTGGATTCTAGTAACTCGTAATCAGGGATACAAGGATGAAAAAACATTGGGGGCATCAACTTCCACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATTGATAATATCTTGGATTGCTTGAAGGATGAAAATGTTATTGGAAAGGGTTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGGGTTGATAGCAGTGAAGAAGCTATGGAAAGCAAGCAAAGCAGATGAAATCGTGGATTCTTTTGCTGCAGAAATTCAGATTCTTGGATACATTCGACATAGGAACATTGTGAAGCTTAGGAAGATGGGAAGCTTTGAACCAGCTGTGTCAATACTAGACACAAAGCTCCAAGGCCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGCATTGCTATGTTTTGTGTGAACTCTTCCCCGTCGGAGCGCCCCACGATGAAGGAAGTGGTTGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGATGATGGGGAAGACCTCTCAACCTCTAATAAAACAGTCCTCAAATCAAAGTTGA | 1905 | 0.4336 | MENIVPHCVTTLLFSLLLFCLTLTKIGVSCLSPDGQALLSLLPAAKSSPFVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGRLSSLQFLYLNSNRLTGSIPQHLSNLTSLEVLCFQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLSSIPEEIFSLKKLSKLLLLGNSLTGRLPSSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSKNRLTGEIPDSVTALTQLQSLDLSHNLLYGGIKVLGSLTSLTSLNISYNNFSGPIPITPFFRTLSSNSYLQNPQLCQSMDGTTCSSSLIRKNGLKSAKTIALIMVILASVTIIVISSWILVTRNQGYKDEKTLGASTSTSGAEDFSYPWTFIPFQKVNFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGGLIAVKKLWKASKADEIVDSFAAEIQILGYIRHRNIVKLRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMMGKTSQPLIKQSSNQS | 634 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2388 | 634 | Gene3D | Ribonuclease Inhibitor | 147 | 410 | IPR032675 | - | |
Aed1g2388 | 634 | Gene3D | Phosphorylase Kinase; domain 1 | 476 | 559 | - | - | |
Aed1g2388 | 634 | ProSiteProfiles | Leucine-rich repeat profile. | 316 | 338 | IPR001611 | GO:0005515 | |
Aed1g2388 | 634 | ProSiteProfiles | Protein kinase domain profile. | 491 | 634 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Aed1g2388 | 634 | SUPERFAMILY | Protein kinase-like (PK-like) | 470 | 556 | IPR011009 | - | |
Aed1g2388 | 634 | PANTHER | - | 210 | 303 | - | - | |
Aed1g2388 | 634 | Pfam | Leucine rich repeat | 293 | 351 | IPR001611 | GO:0005515 | |
Aed1g2388 | 634 | Pfam | Leucine rich repeat | 101 | 159 | IPR001611 | GO:0005515 | |
Aed1g2388 | 634 | ProSitePatterns | Protein kinases ATP-binding region signature. | 497 | 520 | IPR017441 | GO:0005524 | |
Aed1g2388 | 634 | SMART | LRR_sd22_2 | 146 | 172 | - | - | |
Aed1g2388 | 634 | SMART | LRR_sd22_2 | 122 | 143 | - | - | |
Aed1g2388 | 634 | SMART | LRR_sd22_2 | 314 | 335 | - | - | |
Aed1g2388 | 634 | SMART | LRR_sd22_2 | 338 | 363 | - | - | |
Aed1g2388 | 634 | PANTHER | UNNAMED PRODUCT | 210 | 303 | - | - | |
Aed1g2388 | 634 | SMART | LRR_typ_2 | 194 | 218 | IPR003591 | - | |
Aed1g2388 | 634 | SMART | LRR_typ_2 | 314 | 338 | IPR003591 | - | |
Aed1g2388 | 634 | SMART | LRR_typ_2 | 146 | 170 | IPR003591 | - | |
Aed1g2388 | 634 | SMART | LRR_typ_2 | 122 | 145 | IPR003591 | - | |
Aed1g2388 | 634 | Pfam | Leucine rich repeat N-terminal domain | 32 | 71 | IPR013210 | - | |
Aed1g2388 | 634 | PRINTS | Leucine-rich repeat signature | 125 | 138 | - | - | |
Aed1g2388 | 634 | PRINTS | Leucine-rich repeat signature | 314 | 327 | - | - | |
Aed1g2388 | 634 | Gene3D | Ribonuclease Inhibitor | 33 | 145 | IPR032675 | - | |
Aed1g2388 | 634 | PANTHER | - | 8 | 209 | - | - | |
Aed1g2388 | 634 | PANTHER | - | 301 | 552 | - | - | |
Aed1g2388 | 634 | SUPERFAMILY | L domain-like | 49 | 408 | - | - | |
Aed1g2388 | 634 | PANTHER | UNNAMED PRODUCT | 553 | 630 | - | - | |
Aed1g2388 | 634 | PANTHER | - | 553 | 630 | - | - | |
Aed1g2388 | 634 | PANTHER | UNNAMED PRODUCT | 8 | 209 | - | - | |
Aed1g2388 | 634 | PANTHER | UNNAMED PRODUCT | 301 | 552 | - | - | |
Aed1g2388 | 634 | Pfam | Protein kinase domain | 493 | 555 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2388 | Aed-Chr1 | 19915194 | 19918612 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2388 | 91 | 552 | Receptor kinase-like Gene Family | AT5G65700 | 37.872 | 1.12e-81 | 276 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Aed1g2388 | Pkinase | 6.8e-08 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2388 | - | - | gmx:100819611 | 548.895 |