Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2388 ATGGAAAACATTGTTCCCCACTGTGTTACCACTTTGTTGTTTTCCTTGCTACTCTTCTGCCTCACCCTGACAAAGATAGGAGTCAGTTGTCTCTCCCCTGATGGACAAGCCCTTCTTTCTCTTCTGCCTGCAGCAAAATCATCACCTTTTGTTCTCTCCTCATGGAACCCATCAAGTTCAACACCTTGTTCATGGAAAGGCATCACTTGCTCCCCACAAGGTAGAGTTATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGCTTCAACTTCTCAACCTCTCTTCCACCAATGTCTCTGGCTCCATCCCACCCTCTTTTGGTCAACTCTCCCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGGCTATCTTCACTTCAATTCCTTTACTTGAACTCAAACAGATTGACAGGAAGCATTCCTCAACACCTTTCCAATCTAACTTCACTTGAAGTTCTTTGCTTCCAAGACAATCTTCTCAACGGTTCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGAAATCCATATCTCAGTTCTATCCCAGAAGAGATTTTCAGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAAGGTTGCCATCAAGTGTTGCAAATTGCCAATCTTTAGTGAGGCTGAGGGTTGGAGAAAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTTGTGTTCCTTGACTTGTACATGAATCATTTCTCTGGAAGCATACCGGTGGAGATTGCCAATATCACAGTTCTTGAGCTGTTAGATGTGCACAACAACTACCTCACCGGGGAAATTCCATCTGTCATTGGGGAGCTTGAAAATTTGGAGCAGCTTGACCTCAGTAAAAACAGATTGACAGGAGAAATTCCAGATTCAGTGACTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAATCTGCTTTATGGAGGAATCAAGGTTCTGGGGTCTCTCACTAGCCTCACTTCTCTCAATATCTCCTACAACAACTTCTCAGGTCCTATCCCAATAACTCCATTCTTCAGAACTCTATCTTCCAATTCATATCTTCAGAACCCCCAGCTTTGTCAATCCATGGATGGGACTACATGTTCTTCAAGCCTGATTCGAAAAAATGGTTTGAAATCCGCAAAAACCATAGCTTTGATCATGGTCATTCTAGCCTCGGTTACTATAATTGTCATTTCATCCTGGATTCTAGTAACTCGTAATCAGGGATACAAGGATGAAAAAACATTGGGGGCATCAACTTCCACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATTGATAATATCTTGGATTGCTTGAAGGATGAAAATGTTATTGGAAAGGGTTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGGGTTGATAGCAGTGAAGAAGCTATGGAAAGCAAGCAAAGCAGATGAAATCGTGGATTCTTTTGCTGCAGAAATTCAGATTCTTGGATACATTCGACATAGGAACATTGTGAAGCTTAGGAAGATGGGAAGCTTTGAACCAGCTGTGTCAATACTAGACACAAAGCTCCAAGGCCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGCATTGCTATGTTTTGTGTGAACTCTTCCCCGTCGGAGCGCCCCACGATGAAGGAAGTGGTTGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGATGATGGGGAAGACCTCTCAACCTCTAATAAAACAGTCCTCAAATCAAAGTTGA 1905 0.4336 MENIVPHCVTTLLFSLLLFCLTLTKIGVSCLSPDGQALLSLLPAAKSSPFVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGRLSSLQFLYLNSNRLTGSIPQHLSNLTSLEVLCFQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLSSIPEEIFSLKKLSKLLLLGNSLTGRLPSSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSKNRLTGEIPDSVTALTQLQSLDLSHNLLYGGIKVLGSLTSLTSLNISYNNFSGPIPITPFFRTLSSNSYLQNPQLCQSMDGTTCSSSLIRKNGLKSAKTIALIMVILASVTIIVISSWILVTRNQGYKDEKTLGASTSTSGAEDFSYPWTFIPFQKVNFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGGLIAVKKLWKASKADEIVDSFAAEIQILGYIRHRNIVKLRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMMGKTSQPLIKQSSNQS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2388 634 Gene3D Ribonuclease Inhibitor 147 410 IPR032675 -
Aed1g2388 634 Gene3D Phosphorylase Kinase; domain 1 476 559 - -
Aed1g2388 634 ProSiteProfiles Leucine-rich repeat profile. 316 338 IPR001611 GO:0005515
Aed1g2388 634 ProSiteProfiles Protein kinase domain profile. 491 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2388 634 SUPERFAMILY Protein kinase-like (PK-like) 470 556 IPR011009 -
Aed1g2388 634 PANTHER - 210 303 - -
Aed1g2388 634 Pfam Leucine rich repeat 293 351 IPR001611 GO:0005515
Aed1g2388 634 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Aed1g2388 634 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Aed1g2388 634 SMART LRR_sd22_2 146 172 - -
Aed1g2388 634 SMART LRR_sd22_2 122 143 - -
Aed1g2388 634 SMART LRR_sd22_2 314 335 - -
Aed1g2388 634 SMART LRR_sd22_2 338 363 - -
Aed1g2388 634 PANTHER UNNAMED PRODUCT 210 303 - -
Aed1g2388 634 SMART LRR_typ_2 194 218 IPR003591 -
Aed1g2388 634 SMART LRR_typ_2 314 338 IPR003591 -
Aed1g2388 634 SMART LRR_typ_2 146 170 IPR003591 -
Aed1g2388 634 SMART LRR_typ_2 122 145 IPR003591 -
Aed1g2388 634 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Aed1g2388 634 PRINTS Leucine-rich repeat signature 125 138 - -
Aed1g2388 634 PRINTS Leucine-rich repeat signature 314 327 - -
Aed1g2388 634 Gene3D Ribonuclease Inhibitor 33 145 IPR032675 -
Aed1g2388 634 PANTHER - 8 209 - -
Aed1g2388 634 PANTHER - 301 552 - -
Aed1g2388 634 SUPERFAMILY L domain-like 49 408 - -
Aed1g2388 634 PANTHER UNNAMED PRODUCT 553 630 - -
Aed1g2388 634 PANTHER - 553 630 - -
Aed1g2388 634 PANTHER UNNAMED PRODUCT 8 209 - -
Aed1g2388 634 PANTHER UNNAMED PRODUCT 301 552 - -
Aed1g2388 634 Pfam Protein kinase domain 493 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2388 Aed-Chr1 19915194 19918612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2388 91 552 Receptor kinase-like Gene Family AT5G65700 37.872 1.12e-81 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed1g2388 Pkinase 6.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2388 - - gmx:100819611 548.895