Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2379 ATGAAAGGGGGTAGGGAAAGGGAAATCAAGAATCAAGATCAAGATTTCTTCGTGACTCCTCCCTTTTCCGACACTTCTTTTATTATCCTCAATCGGCCAGCACCAACAGCATCGGCGGCGACGGTGTCACTCTCCAACAACACATCCGCGGCGAAAATGTCTCTGGTGGCGAACGAGGAGTTTCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGCAAGCAGAAGATAATGTTTGCCATGACCTCGATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGTCCGATGTTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCAGAGTTGGATAATTTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGGAAGTACTCTCAGGTTGTATCTAATGCTCTTGATATGAAGCTCAGGGATGACTTGGAGAGACTTAAGAAGATCAGCTGTTTGAATTGTGTTGGGATGGTGCAACTGTTTGCTTGTGTTGTTTATCTATGA 564 0.4681 MKGGREREIKNQDQDFFVTPPFSDTSFIILNRPAPTASAATVSLSNNTSAAKMSLVANEEFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKSDVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKISCLNCVGMVQLFACVVYL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2379 187 Gene3D 30s ribosomal protein s13, domain 2 144 174 IPR027437 -
Aed1g2379 187 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 51 169 - -
Aed1g2379 187 ProSiteProfiles Ribosomal protein S13 family profile. 67 171 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed1g2379 187 Pfam Ribosomal protein S13/S18 66 172 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed1g2379 187 SUPERFAMILY S13-like H2TH domain 65 172 IPR010979 GO:0003676
Aed1g2379 187 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 51 169 - -
Aed1g2379 187 Gene3D - 53 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2379 Aed-Chr1 19802708 19804945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2379 53 185 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 84.962 2.74e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2379 K02964 - gmx:100500087 228.024