Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2374 ATGGGCTGTGTTCAGGCCAAGTCAATGGATTTGGAAGAAGGTCCAGACTACAGGACCCTTGAAAGGTTGAAGCTTGATAATGGCTATGTCCCAAGCACTGACTTTGTTGCTCATAGAAGATCCACCGGCCAAAGACACCATGAACCTACTAATAAGGACTACCAAAGGCTGCATCATCAGAGAGAACAACAACCCATCATCAAAAAGCATAATAATAATAGTAATAAACAACTTGAGTCTGGTACTGTTGTTGCCAATGGTGAAGGGCTTCTTCATAAGGCAAAGGTGGTTAATAGAGAGGGAAGGAGAGTGACACGCTGTGATGATAATAAGAAGTTGCCAAACAAGTCCTGCTTTGAGGATGATCAGATGGTTGATGGCTGGCCAAAGTGGTTGGTTGATAATGTTCCTTCACAAGTCTTCGCTGGCTTGCTTCCCAGGAGTGCTGAATCATACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTACAAAGCTCTGGATCGAGATACAGGAGAAATTGTGGCCCTGAAGAAGGTTAAATTCAATACATCAGAGCCCGAAAGCATTAAGTTTATGGCAAGAGAAATTATGATATTACAGAGACTGGATCATCCCAATGTACTAAAACTCAAAGGATTAGCCACCTCAAGAATGCAGTACAGTATATATCTAGTTTTTGAGTTCATGCAAACAGATTTGGCAAGAGTTATTGCTTGTCCTGCAGAGAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCATGAAAGGGGAATTCTGCATCGAGATATAAAAGGGTCAAACCTTTTAATTGATAAAAATGGGATGCTTAAGATTGCAGATTTTGGTCTTGCCAATTTTTATGGTCCAGACCGTCACCAGCCTCTCACAAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTATTGTTAGGCGACACAAATTATGGAGTTGGTGTTGATCTATGGAGTGCTGGATGTCTCCTGGCAGAAATGTTTAAAGGAATTCCAATCATGCCTGGCAGAACTGAGGTTGAGCAGCTTCATAAAATTTTCCGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACAACTTTTAGACCTCCAAAGTCTTATAGACCTAGCCTTGTAGAAACTTTCGAGGATCTCCCTCCATCTTCCTTAGGTCTTTTATGCACTTTGCTTGCTTTGGATCCTGCATTCCGTGGCAGTGCATCTAAAGCTCTTAGAAATCAGTTTTTCCTTACAAGCCCATTGGCATGTGACCTCTCTGGTCTGCCTGTTATCTTCAGCAAGGATGATGAGCTTGTTCAAGCCAATGAACAGATCAAGTACATGAACTCTAAAATTAGGCGTTCTCGTACATATCTGGAGCGTCGTAAGAATTCAGCATCTAAGAGGCCAATAGAACATACTGTATCTTCTAAAGAGGATCTGATAAGGAATGCTAAACCTGAAACTTTTGTTCCAACTGAAGAAATGGATAGCACGAGTAGTACCTCATCTAGTGTAAACCCAGGAGGGGCTAAGGATCAATCACCTTTCTTTCTATCTCCATTTGGAGCTTTAGATCAAAAGCTATCTCCAGAAAACCATCGCCATGTTAATGTTGGTGAAAAAAAAATCAAGAACCTTCCTCCAATACCAAAGTCAAAACCAAATGCTACCAAGAAAGATGACAGCAGATACAGACCAGACCACTTTTTCAGGTCAGCTTCCACCAGAGAATTTAGATACTTAAAAAGAGAGGAACGTTTACTCTTGGACATTGATGATTAG 1839 0.4149 MGCVQAKSMDLEEGPDYRTLERLKLDNGYVPSTDFVAHRRSTGQRHHEPTNKDYQRLHHQREQQPIIKKHNNNSNKQLESGTVVANGEGLLHKAKVVNREGRRVTRCDDNKKLPNKSCFEDDQMVDGWPKWLVDNVPSQVFAGLLPRSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVKFNTSEPESIKFMAREIMILQRLDHPNVLKLKGLATSRMQYSIYLVFEFMQTDLARVIACPAERLTEPQVKCYMHQLLSGLQHCHERGILHRDIKGSNLLIDKNGMLKIADFGLANFYGPDRHQPLTSRVVTLWYRAPELLLGDTNYGVGVDLWSAGCLLAEMFKGIPIMPGRTEVEQLHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETFEDLPPSSLGLLCTLLALDPAFRGSASKALRNQFFLTSPLACDLSGLPVIFSKDDELVQANEQIKYMNSKIRRSRTYLERRKNSASKRPIEHTVSSKEDLIRNAKPETFVPTEEMDSTSSTSSSVNPGGAKDQSPFFLSPFGALDQKLSPENHRHVNVGEKKIKNLPPIPKSKPNATKKDDSRYRPDHFFRSASTREFRYLKREERLLLDIDD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2374 612 PANTHER CYCLIN-DEPENDENT KINASE 68 577 - -
Aed1g2374 612 Pfam Protein kinase domain 152 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2374 612 Gene3D Phosphorylase Kinase; domain 1 142 234 - -
Aed1g2374 612 MobiDBLite consensus disorder prediction 477 531 - -
Aed1g2374 612 SMART serkin_6 152 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2374 612 MobiDBLite consensus disorder prediction 573 587 - -
Aed1g2374 612 MobiDBLite consensus disorder prediction 511 529 - -
Aed1g2374 612 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Aed1g2374 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Aed1g2374 612 PANTHER CELL DIVISION PROTEIN KINASE 68 577 - -
Aed1g2374 612 SUPERFAMILY Protein kinase-like (PK-like) 147 438 IPR011009 -
Aed1g2374 612 MobiDBLite consensus disorder prediction 39 57 - -
Aed1g2374 612 MobiDBLite consensus disorder prediction 556 587 - -
Aed1g2374 612 MobiDBLite consensus disorder prediction 477 503 - -
Aed1g2374 612 Gene3D Transferase(Phosphotransferase) domain 1 235 481 - -
Aed1g2374 612 ProSiteProfiles Protein kinase domain profile. 152 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2374 612 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2374 Aed-Chr1 19775354 19780508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2374 147 495 Core Cell Cycle Gene Families AT5G10270 42.507 1.75e-90 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed1g2374 Pkinase 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2374 K08819 - gmx:100776854 1063.52