Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2370 ATGGATCACGCCTTCCAAGCCATCGTCGCCGCCATCGGCAGCTTCTTCCTGGTGACGCTCCTCCTGGCCGCCGCCATCCTCCTCTGCCAGCACCACCGCAACTCCACCAAAGCCCGAACCCGCAACTCTCAGATCCGAGCCCGACCAGCTCCCCACCGCGAAGCCACCTTCCCCCCCCTCGCCGGCGTGGACGCCAGCTGGTCCTCCGATCCCAACCTCATGATCTCCTGGGAGGACCTCGCACGCGCCACCGAGAACTTCTCCCCGCACCTAATCGTCGGCGACGGCAGCTTCGGGCTCGTCTACAAGGCTCGTCTCTCCAACGGCACACACGTGGCCGTCAAAAAACTCTCCCCGGACGCCTTCCAAGGGTTCCGTGAGTTCACGGCGGAGATGGAAACCCTAAGCCGGCTCCGGCACGCCAACATCGTGAAAATCCTCGGCTACTGGGCCTCCGGACCGGAACGCCTTCTTGTCTACGAGTTCATCGAAAAGGGAAACCTCGACCAGTGGCTCCACGAGCCCGATCTGTCTCGCTCCCCCTTGCCCTGGGCCACACGCGTCAACATCATCCGCGGTGTGGCCCATGGGCTCTCCTACCTTCACGGCCTCGACAAGCCCATCATCCATCGCGACATAAAGGCCAGCAACATCTTACTGGACTCCAAGTTCGAGGCCCATATCGCGGACTTTGGGCTAGCCCGCAGGATCGACAGAACGCACTCGCACGTGTCGACGCAGTTCGCGGGAACCATAGGGTACATGCCGCCCGAGTATATAGAAGGGTCGAATGTAGCTAACCCGAAGGTGGATGTTTATAGTTTTGGGATTTTGATGATTGAGACAGCATCGAGTCATCGGCCCAATTTGCCAATGAAATTGGGCCAGGACGATATTGGGACGGTCCATTGGGCTAGGAAGATGAAGGAGCAAAATACGGAGATGGAGTTGGTGGATGTCAATATTTCAAGAGAAGAAGGGTTGAAGGAAGAGAGTGTGAAGGAGTACGTGCGCATCGCGTGTGAATGCACCCAGGAGATGCAGAAGGAAAGGCCCAAAATGCCCCAAGTTGTACAATGGTTGGACGAAATGCCACTTTGA 1101 0.5804 MDHAFQAIVAAIGSFFLVTLLLAAAILLCQHHRNSTKARTRNSQIRARPAPHREATFPPLAGVDASWSSDPNLMISWEDLARATENFSPHLIVGDGSFGLVYKARLSNGTHVAVKKLSPDAFQGFREFTAEMETLSRLRHANIVKILGYWASGPERLLVYEFIEKGNLDQWLHEPDLSRSPLPWATRVNIIRGVAHGLSYLHGLDKPIIHRDIKASNILLDSKFEAHIADFGLARRIDRTHSHVSTQFAGTIGYMPPEYIEGSNVANPKVDVYSFGILMIETASSHRPNLPMKLGQDDIGTVHWARKMKEQNTEMELVDVNISREEGLKEESVKEYVRIACECTQEMQKERPKMPQVVQWLDEMPL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2370 366 SMART serkin_6 87 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2370 366 CDD STKc_IRAK 93 364 - -
Aed1g2370 366 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 363 - -
Aed1g2370 366 SUPERFAMILY Protein kinase-like (PK-like) 71 364 IPR011009 -
Aed1g2370 366 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Aed1g2370 366 Gene3D Phosphorylase Kinase; domain 1 60 162 - -
Aed1g2370 366 Gene3D Transferase(Phosphotransferase) domain 1 163 364 - -
Aed1g2370 366 PANTHER OS01G0253100 PROTEIN 1 363 IPR045271 GO:0004714|GO:0006468
Aed1g2370 366 Pfam Protein kinase domain 92 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2370 366 ProSiteProfiles Protein kinase domain profile. 87 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2370 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2370 Aed-Chr1 19747531 19748631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2370 59 364 Receptor kinase-like Gene Family AT5G07280 42.997 8.37e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Aed1g2370 Pkinase 6.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2370 - - gmx:100802728 626.706