Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2366 ATGCAAGGGAGGAGCAGTACTGTTGTAGGTTCGGTAATTCCGAGCCATGTGGTGTCACCCCAAACCAACGCGGAGTGGGTCCCGGAAAGTGGTTTTCCCATGATGTCGTCACGTTTTATGCATGCGCCCTCTTCTCCTGGGCCTCCTCTCTTGGGCTCCTCTGCCTCTGCTTGGGTTGGACACAAGAGAGCGCGTGAAGACGACACTGGTGCTGGCGCGAGTGCGGGTGTTGTTGCTGCAGCAGCAGCTTCTTCACAAACACAAACACAAGGGAGTGAAAGTGTTTCAAATTCAAACGAAGAAAGTGGTGGCGAGAGGAGAAGGAGATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCAGCGAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTTAATTTCCCCGAAAACGTTGCCCCGGTTCGCCCTCCGCTTCCTAATTTACCGGCAACTGTGGTTGCCGGTTCTGGTTCCGGTTCCGGTTCTGGTTTCGTAGCGACAGGTTTTACTCCGACGTTGATGCAAGGGGCACCAATTCAGGGATCCTCTGATTTTTTGAGAGACTATTGGGGGTATTCTCAGCTGCTGAGGAGCACAGGGGAATTCCAAGGACTCGACCAGTGGTTCTTTGATTCGCAAATGGCAGCGTTTCAATCTTCTTCGTCCTCGTTGTTACCACCGCAACCGCCGCCGTCGTTATTGCCTTCCCCTGCTTCGTTTCCTCTGTTTGCTTCTAGCCAGCACATGGGAATGGTTTTCCGGCCGCCGGGAGAGCAGGCTCGCGCCGGAGAAGACGGTGGCAGCGGGTCAGAGTTTTCAGTGCTTCCACCTTCTACGTGGTCAGATACCAGTGGCTATCCTCCTCCTCCTCCTGGTTGA 972 0.5525 MQGRSSTVVGSVIPSHVVSPQTNAEWVPESGFPMMSSRFMHAPSSPGPPLLGSSASAWVGHKRAREDDTGAGASAGVVAAAAASSQTQTQGSESVSNSNEESGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAPVRPPLPNLPATVVAGSGSGSGSGFVATGFTPTLMQGAPIQGSSDFLRDYWGYSQLLRSTGEFQGLDQWFFDSQMAAFQSSSSSLLPPQPPPSLLPSPASFPLFASSQHMGMVFRPPGEQARAGEDGGSGSEFSVLPPSTWSDTSGYPPPPPG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2366 323 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Aed1g2366 323 MobiDBLite consensus disorder prediction 282 323 - -
Aed1g2366 323 SUPERFAMILY DNA-binding domain 109 167 IPR016177 GO:0003677
Aed1g2366 323 MobiDBLite consensus disorder prediction 38 115 - -
Aed1g2366 323 MobiDBLite consensus disorder prediction 80 99 - -
Aed1g2366 323 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Aed1g2366 323 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Aed1g2366 323 MobiDBLite consensus disorder prediction 1 24 - -
Aed1g2366 323 CDD AP2 117 168 IPR001471 GO:0003700|GO:0006355
Aed1g2366 323 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Aed1g2366 323 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Aed1g2366 323 Gene3D AP2/ERF domain 108 168 IPR036955 GO:0003700|GO:0006355
Aed1g2366 323 PANTHER DNA-BINDING DOMAIN 65 279 IPR044808 GO:0003700|GO:0009873
Aed1g2366 323 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 65 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2366 Aed-Chr1 19722991 19723962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2366 92 169 AP2-EREBP Transcription Factor Family AT5G61890 71.795 1.80e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g2366 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2366 - - gmx:100802242 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0740 7 5621730 5624414 Aed1g2366 1 19722991 19723962 PCT