Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2364 ATGTCTCACAGGAAGTTCGAACACCCAAGACACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGCAAAGTGAAGGCTTTCCCCAAGGATGACCCATCCAAGGCACCTAAGCTCACTGCTTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTGTTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCTCCGTACATTGAACACTGTATGGGCTCAGCACTTGAGTGAGGAAATTAAGCGTCGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAATCCGAGGAGGGAAAGAAAAACATTGAGGCACAGCTTGAAAAACTGAAGAAGTATGCTACTGTGATTCGTGTTTTGGCTCACACCCAGATCCGAAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCACATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAGAAGGTTGACTTTGGATACAGTTTCTTTGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGTGTTACAAAGGGTAAGGGTTATGAGGGTGTTGTCACTCGTTGGGGTGTCACCCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCCTGGCATCCTGCAAGAGTTTCATTCACTGTTGCAAGGGCTGGTCAGAATGGTTATCACCACAGGACTGAGTTGAACAAGAAGGTCTACAAGCTCGGCAAAGCTGGAGATGAGTCTCACAATGCTCTTACTGAGTTTGATAGGACTGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTATTGTGAAGGATGATTATCTCATGATTAAAGGATGCTGTGTTGGTCCCAAGAAAAGGGTTGTTACATTGCGCCAATCCCTACTTAAGCAGACTTCTCGTGTTGCCCTTGAGGAGATCAAACTGAAGTTTATCGACACCTCTTCAAAGTTTGGACATGGTCGCTTCCAGACCACACAGGAGAAGCAGAAGTTCTTTGGACGCCTCAAAGCATAA 1170 0.4632 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIVETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWCKSKKKAFTKYSKQYESEEGKKNIEAQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGSIAQKVDFGYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHNALTEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2364 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Aed1g2364 389 MobiDBLite consensus disorder prediction 1 37 - -
Aed1g2364 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Aed1g2364 389 Gene3D Translation factors 44 385 - -
Aed1g2364 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Aed1g2364 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Aed1g2364 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Aed1g2364 389 Gene3D - 83 207 - -
Aed1g2364 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2364 Aed-Chr1 19703107 19706001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2364 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.080 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2364 K02925 K10999 gmx:100806786 777.704