Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2350 ATGGAGAAGCTTGGAGAAGATACCACAGTGATGGAAACAACCTCGTCCGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGATAAGGTCCGATATGGATGCTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGAACCAAAGAGAGCAGAAGTGGGAAACACGAGGGGAAAACCTACAAGTTTTTTGATCAATTACAAGCCCTTGAGAACCAGTTCACTGTTTCTTACCCGCCAAAACCACAACCCACTTTGACAACAAAAACAATAACAAACACAGTGGCATTACCACTTCCAACAACAGCAATCTCGTATGTCACCACCACTGTTCCATCCACAAACCCTACAATCATATCTCCTTCACCACCACCACCACCACCAACCAATTCCACCACCACAACCACCATCACTTCCCCAACAATAGTAACCAACCCTAGAAACCCTCCACAACCCAACAACAACAACAACATCTCTTTCTCTTTGCTCAACATGAATAACCTCTTCTCAACAACTACTTCAACCTCTTCTTCCACGGCCTCCGATGAGGACTTGGAAGAGAAGTACCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACGAGGCAAGTCTTGGCCAAGCAAGAGGAAATGCAGAAGAGGTTCTTGGAAGCCATTGACAAAAGGGAGAGGGATAACGTTACACAACAAGAGTCTTGGAGAATCCAAGAAATGGCAAGAATCAACAGAGAACACGAGCTTCTTGTCCAAGAAAGATCAACTGCAGCAGCAAAAAACGCTGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGCACCAAAATTCCACAACACAAGCCGGTGCCAATTTTCCTCAACAACCACCACCTCCACCCCAAGTAGTACAACCACCACCACCACAACCACAAGCACCACTGATGATGTCAAGTAATAACAACATTGAAATTGAGAAAATGAATAATGGTCACAGTCACAATGTTGTTGTTGCTGCTACTCCTACTACTATCGTTGCTGCTACTGCTACTACTCCAACTTCATTGAGTGGTTCTTTATCTTCTTCTAGGTGGCCAAAGACAGAAGTTCATGCTTTGATAAGAATAAGGACAAGTCTTGAAGCAAAGTACCAAGAGAATGGACCAAAGGCTCCATTGTGGGAGGACATATCAGCGGGAATGTTGGGACTCGGGTACAACAGGAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAGAGCAACAGGCAAAGGCGTGAGGATAGTAAGACATGTCCCTATTTTGAAGAACTTGAAGCTTTGTACAAAGAAAAGACCAAGACTTTTGGCTCTAATAATTCATTCCAGAACATGATCAAGCCACATGAGATGATGGAGCCCTTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCCTCTCAATACGAACAAGGTGCAGCCAAGGAAAGTGATCATCAATATGAAAGAAAAGAAAGAGAGGACGAAGAAGATGAAGAAGAAGAAGAAGAAGAGGAGGAGAGTGTGGAGGATGAAGGAGGTAGCCGTTATGAGATTGCGACAAACAAACTTTCTTCAGTGGACACAGTTGAATGA 1632 0.4479 MEKLGEDTTVMETTSSGEAVAAHDGGEIRSDMDAVFRDSSLKGPLWEEVARTKESRSGKHEGKTYKFFDQLQALENQFTVSYPPKPQPTLTTKTITNTVALPLPTTAISYVTTTVPSTNPTIISPSPPPPPPTNSTTTTTITSPTIVTNPRNPPQPNNNNNISFSLLNMNNLFSTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKRERDNVTQQESWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQHQNSTTQAGANFPQQPPPPPQVVQPPPPQPQAPLMMSSNNNIEIEKMNNGHSHNVVVAATPTTIVAATATTPTSLSGSLSSSRWPKTEVHALIRIRTSLEAKYQENGPKAPLWEDISAGMLGLGYNRSAKRCKEKWENINKYFKKVKESNRQRREDSKTCPYFEELEALYKEKTKTFGSNNSFQNMIKPHEMMEPLMVQPEQQWRPPSQYEQGAAKESDHQYERKEREDEEDEEEEEEEEESVEDEGGSRYEIATNKLSSVDTVE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2350 543 MobiDBLite consensus disorder prediction 121 135 - -
Aed1g2350 543 MobiDBLite consensus disorder prediction 136 164 - -
Aed1g2350 543 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 28 51 - -
Aed1g2350 543 PANTHER - 51 532 - -
Aed1g2350 543 Gene3D - 362 423 - -
Aed1g2350 543 MobiDBLite consensus disorder prediction 119 164 - -
Aed1g2350 543 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 51 532 - -
Aed1g2350 543 Pfam Myb/SANT-like DNA-binding domain 360 447 IPR044822 -
Aed1g2350 543 MobiDBLite consensus disorder prediction 290 311 - -
Aed1g2350 543 MobiDBLite consensus disorder prediction 480 543 - -
Aed1g2350 543 MobiDBLite consensus disorder prediction 1 26 - -
Aed1g2350 543 CDD GT1 361 425 - -
Aed1g2350 543 MobiDBLite consensus disorder prediction 279 314 - -
Aed1g2350 543 PANTHER - 28 51 - -
Aed1g2350 543 Coils Coil 493 524 - -
Aed1g2350 543 ProSiteProfiles Myb-like domain profile. 354 418 IPR001005 -
Aed1g2350 543 MobiDBLite consensus disorder prediction 506 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2350 Aed-Chr1 19544001 19546765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2350 28 481 Trihelix Transcription Factor Family AT1G76890 41.748 1.81e-104 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed1g2350 Myb_DNA-bind_4 1.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2350 - - gmx:100799041 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0716 7 5355027 5357968 Aed1g2350 1 19544001 19546765 PCT