Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2349 ATGCTTGGGGACTCAGCTGTGCTGGGAGCAGGAGGTGGCGGCGCCGGAGGAGAAGGTGGTGGCAACGGCGATGCAGTGGCGGCAGCGGTGACCCATGATGTGGTGGCAACAACGACTACCGGTGGCGGATCAAATAATTCAGGGGACGATGAAAGGGGGAGAATCGAAGAGGGGGAGCGTAGCTTCGGTGGTAACCGGTGGCCACGACAAGAGACTTTGGCCTTGTTAAGGATACGGTCGGATATGGACGTGGCTTTTCGAGATGCAAGTGTTAAGGGTCCCTTGTGGGATGAAGTATCCAGGAAATTGGCAGAGCTTGGGTATCACAGAAGCTCGAAAAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGCAAAACTTATCGTTTCTTTGATCAACTACAAGCCCTTGAGAACCACACTCCATCACCCCATTCCCCCAACCCATCACCAAGACCACCACCATCAAGATCAGTGTCACTAGCAATACCAACACCAACGGTGCCAATAGTACTCTCCAACACGCTCACTAGTACTGTCCCCCATACCCATATCACTGTTCCATCAACAATAACCATACCTCCACCCATTCTCACAATCCCTACTTACCCTCCACCAAACCCTACCAATTTCCCAGCGCCGCCGTCAAACCCTACCGCCAACACAACCGCACCACTCTCTTTCCCCACCGACACCTTCTCCAATTCCAGCTCCTCCTCCACCTCCTCCGACGAAACACTCGAAGGGAGGCGCAAGAGGAAGCGCAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTCATCGTGAAGCAGGAGGAGCTACAGAAGAAGTTCTTGGAAGCCATAGAGAAACGCGAACACGACCGAATAGCAAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGAATCAATAGAGAGAGAGAAATCCTAGCACAGGAAAGATCCATTGCTGCAGCCAAAGACGCCGCCGTTATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGCCAAGCATTGAGCAACATCGTACAACTACAAGCGCAACCACAGCCACAGCGGCCGCTACAACAAGTGACACCACCCACTGCAGCACCACTTCCCGTGCAACAACCACCGCCCGTGGTTGTTACACCATCCGAGGTGCTGCCAGTGGTATCACAAGTGAGCAATATGGAGATAGTGAAAGTCGATAACAATAACAATAACAATGGGGGGAATGGGAATTTCACGCCATCGAGTTCTTCATCTCGGTGGCCAAAAGTGGAAGTCGAGGCGTTGATAAAGATTCGAACGGACATGGATGCGAAGTATCAAGAGAATGGACCAAAGGGTCCTCTCTGGGAGGAGATCTCAGTCTCAATGAGGAAGCTCGGGTACAACAGAAACTCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAACGGAGACCGGAAGATTCCAAAACGTGCCCTTACTTCCACCAGCTGGACGTGCTCTACAGGCAGAAGCACAAAACCGAGAGCCCCGCCACGGCGGCGAAGCCGGAGATCACGGTGGCGCCGCTGATGGTGCAGCCGGAGCAGCAATGGCCACCTCAACAGCAGGATAGGGACATCACAATGGAAGACATGGAGAATGAAGACGATGAGTATGAAGAAGAGAGAGAAGAAGAAGATGAAGAAGACGAAGACGAAGAAGGTGGTGGAAGTGGTGGAAGTGGTGGTGGTGGGAACTATGAGATAGTGGCGAACAAAACAAGTGGTGCTTCAGTGGGGGCTTCAACGGAGTAA 1857 0.5105 MLGDSAVLGAGGGGAGGEGGGNGDAVAAAVTHDVVATTTTGGGSNNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPSPHSPNPSPRPPPSRSVSLAIPTPTVPIVLSNTLTSTVPHTHITVPSTITIPPPILTIPTYPPPNPTNFPAPPSNPTANTTAPLSFPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIVKQEELQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSNIVQLQAQPQPQRPLQQVTPPTAAPLPVQQPPPVVVTPSEVLPVVSQVSNMEIVKVDNNNNNNGGNGNFTPSSSSSRWPKVEVEALIKIRTDMDAKYQENGPKGPLWEEISVSMRKLGYNRNSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDVLYRQKHKTESPATAAKPEITVAPLMVQPEQQWPPQQQDRDITMEDMENEDDEYEEEREEEDEEDEDEEGGGSGGSGGGGNYEIVANKTSGASVGASTE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2349 618 MobiDBLite consensus disorder prediction 234 258 - -
Aed1g2349 618 CDD GT1 434 499 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 200 267 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 33 47 - -
Aed1g2349 618 Coils Coil 559 586 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 208 233 - -
Aed1g2349 618 SMART sant 63 125 IPR001005 -
Aed1g2349 618 SMART sant 432 494 IPR001005 -
Aed1g2349 618 CDD GT1 65 130 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 49 64 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 152 176 - -
Aed1g2349 618 ProSiteProfiles Myb-like domain profile. 428 492 IPR001005 -
Aed1g2349 618 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Aed1g2349 618 Pfam Myb/SANT-like DNA-binding domain 434 520 IPR044822 -
Aed1g2349 618 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Aed1g2349 618 PANTHER - 1 605 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 545 618 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 158 174 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 563 590 - -
Aed1g2349 618 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 605 - -
Aed1g2349 618 Gene3D - 67 128 - -
Aed1g2349 618 Gene3D - 436 497 - -
Aed1g2349 618 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2349 Aed-Chr1 19529452 19532962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2349 56 552 Trihelix Transcription Factor Family AT1G76880 55.706 8.79e-162 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aed1g2349 Myb_DNA-bind_4 5.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2349 - - gsj:114402550 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0715 7 5337570 5342602 Aed1g2349 1 19529452 19532962 PCT