Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2342 ATGGAGAAGAATATGGCAATGGCATTGGCGCCTTTCATTCCAGAAGTTCATGCCACGGAACTGTTACCAACTCTTGTCAGAGGTGCTAAGCTGATCACTAGATCTGAAAATAAATATGAGAATCACAACACTCTTGATATCAGTACTCATCAGTGCAGTGGTGAGACACAAGCCAACTTAGCTTCAGTTATTGCTCAGTACGTGGAAACTCTAAATCAGTACAGCTTGCGCAACTTGGGCTATCCAACTAATCAAGACTTCAACTATGATGCAATAAAACCATTACTTCATTTTCATCTCAACAATGCTGGTGATCCATTTCTAGGGAGCAGCTTCTCCCTAAATTCAACAACTTTTGAAGTTTCTGTGCTTAATTGGTTTGCAAATCTGTGGGAGATAAAGAAGAATGAGTATTGGGGATACGTCACAACTGGTGGAACTGAAGGCAATCTTCATGGAATTTTAGTAGGGAGAGAACAACTTCCCGATGGAATATTATATACCTCACAAGATTCACATTATTCAATTTTCAAAATAGCTAGAATGTATCGAATGAAGTGCATGAAGGTTAGCACATTAATCACCGGTGAGATTGATTGTGTTGATCTGAAGGATTTACTTCTTGCACACAAGGACAAACCAGCCATTATCAATTTAAACATAGGAACGACTATGAAAGGAGCTATTGACGACCTTGATCTTGTAATACAAACGCTTGAGGAATGTGGTTTCACTCGTGAACGATTCTACATTCATTGTGATGGAGCTCTATTTGGAATGATGCTGCCTTTTGTCGAACAAGCACCAAAGATTACCTTCAAGAAACCCATTGGAAGTGTAACTATTTCTGGACATAAGTTCATAGGATGTCCAATTCCTTGCGGTGTTGTAATAACTCGTTCAAAATACATTAATGCATTATCGAAAGATATTGAATATATTGCATCAAGGGATGTTACAATCACAGGTAGCCGTTGCGGGCATGCTTCAATTTTCTTATGGTATGCCTTAAAAAAGAGAGGTATAATAGGATTCCAAAATGAAGTGCAAAAATGTATAATGAATGCACATTATTTAAAAAATCAACTACGGGATGCTGGAATTGGTGTAATGTTAAACAAGTTTAGCAACATTGTCATCTTTGAAAGGCCTCATGATGATGAATTTAGTTGTAAGTGGAGTTTGGCATGCAAGGGGAATATTGCACATGTGGTGGTGATGCAACACATTAACATTGAAATGTTGGATTCATTTGTTGACGAATTTCTTCTGAAACGATCCATTTGGTTTGAAGATGGACAATTTCAACCGCTATGCATTGCAAATGAAATTGGTTTTGAAAATTGTGCTTGTTCAGTGCACAATTCAATATCATAG 1377 0.3755 MEKNMAMALAPFIPEVHATELLPTLVRGAKLITRSENKYENHNTLDISTHQCSGETQANLASVIAQYVETLNQYSLRNLGYPTNQDFNYDAIKPLLHFHLNNAGDPFLGSSFSLNSTTFEVSVLNWFANLWEIKKNEYWGYVTTGGTEGNLHGILVGREQLPDGILYTSQDSHYSIFKIARMYRMKCMKVSTLITGEIDCVDLKDLLLAHKDKPAIINLNIGTTMKGAIDDLDLVIQTLEECGFTRERFYIHCDGALFGMMLPFVEQAPKITFKKPIGSVTISGHKFIGCPIPCGVVITRSKYINALSKDIEYIASRDVTITGSRCGHASIFLWYALKKRGIIGFQNEVQKCIMNAHYLKNQLRDAGIGVMLNKFSNIVIFERPHDDEFSCKWSLACKGNIAHVVVMQHINIEMLDSFVDEFLLKRSIWFEDGQFQPLCIANEIGFENCACSVHNSIS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2342 458 PANTHER - 45 454 - -
Aed1g2342 458 SUPERFAMILY PLP-dependent transferases 77 422 IPR015424 -
Aed1g2342 458 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 279 300 IPR021115 GO:0016831
Aed1g2342 458 PANTHER SERINE DECARBOXYLASE 45 454 - -
Aed1g2342 458 Pfam Pyridoxal-dependent decarboxylase conserved domain 116 366 IPR002129 GO:0016830|GO:0019752|GO:0030170
Aed1g2342 458 Gene3D - 95 337 IPR015421 GO:0003824
Aed1g2342 458 Gene3D Aspartate Aminotransferase, domain 1 338 426 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2342 Aed-Chr1 19464730 19466781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2342 221 363 Calmodulin-binding Proteins AT5G17330 27.389 1.04e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2342 K25193 - gmx:100781665 727.628