Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2341 ATGGATTTGGTGGAAGGCGTCGGAGAGAGTTCATCGCCGCCGCGCGCCTTCAGCGGCTACAGCAACTACGACGTCCGGAACGACGTCTACAACCGCCTAGTCGAAACCGGCCACGACGAAGCCGTTTCCAACCCCGACTTCCGCGAACACTTGGAGGCTCACTTCAATCGCTTGCCTCCCAGCTATGGTCTCGATGTGAATATCGATAAAGCTGAAGATGTTCTGTTGCATCAAACGCTTCTTGCTTTGGCCAAGGACCCTGACAAGCGCCCTGTATTCCATATACGCTTCCTCGAGAATATTTCAACTAGAACAGATGGTGAAGATCATCAAATTTTAAGTACTCATTATAGCCCAGGATCATCTTCTCATGCAACAAATGGGGGAGCTGTATCATCTGGTAAAAGTAAGATGAGGGATATTACAAATGAGTTTGAGCCTTGCTCGAAGCTTGAGGGCCTAAATTTGGATGTTAGAAAGAACTCAAAGGAGGCAGAGGAAAAATTTCTCAACGACAATTTTTTCCAGAGGCACGAACATTCAAGTGTCCCTGTTCATGAAATAATATTTTCCACTGTTGACAAGCCAAAGCTGTTAAGCCAGCTGTCTGCTTTGCTGTCTGATATTGGGCTTAACATCCGTGAAGCTCATGTTTTTTCCACAACTGATGGCTATTCCCTTGACGTGTTTGTGGTGGATGGATGGCCAGTAGAGGAAACAGATGATCTGTATGATGCTATGGAAAAAGCTGTAACAAGAAGTGAGGGGTCATGGTCTCGTTCTTCAATTTCTCATTCAGCTGTGGAAAAAGCCTTAGCAACTGAAGGAAAATCAGGAGATTGGGAAATAGATAGGAGGTTGCTGAAGTTAGGAGAAAAAATAGCGTCTGGATCCTCTGGAGATTTGTATCGTGGAGCTTATCTCGGTGAAGATGTAGCTATTAAGGTTCTGAGATCTGAGCAATTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAATTGTCCACATTTGTGCATAATAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACGTGCACAAAAATCATAATGTCTTAGAGCTGTCTCAATTACTAAAATTTGCAATTGATGTCTGCAAGGGTATGGAGTATTTGCATCTAAACAACATCATTCACAGAGATCTGAAGACGGCTAATTTGCTGATGGATACACACAATGTTGTTAAAGTTGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCACCAGAGGTACCATATGACACCATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTGCGGCCAGAACTTCCAAAGCACGGGCACCCTAAACTATTAGAATTGATGCAAAGATGTTGGGAAGCAATTCCAAGCGACCGTCCATCCTTTAATGTTATAACAAATGAACTTGAAAATATTTTGCAAGAAATTGAGATTCAGAAGCGAATGGTGCTTGACATTTTCAGTTATTTTAGACGGTTGGATTGGATGGATCTGACTGCGTTTTTTTCCCCTCACTCTCTGGCAGATGTAGAGTTTTTCCACGTTCCCTTGTGGGCTGTGGCACAGAGGGAGAAAGGAGTTCACACAAGTTGTGACCAATACAAAGTGAGAAAATGTAAAGAGGCATACTAA 1752 0.4361 MDLVEGVGESSSPPRAFSGYSNYDVRNDVYNRLVETGHDEAVSNPDFREHLEAHFNRLPPSYGLDVNIDKAEDVLLHQTLLALAKDPDKRPVFHIRFLENISTRTDGEDHQILSTHYSPGSSSHATNGGAVSSGKSKMRDITNEFEPCSKLEGLNLDVRKNSKEAEEKFLNDNFFQRHEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDDLYDAMEKAVTRSEGSWSRSSISHSAVEKALATEGKSGDWEIDRRLLKLGEKIASGSSGDLYRGAYLGEDVAIKVLRSEQLNDALEDEFAQEVAILRQVHHKNVVRFIGACTNCPHLCIITEYMPGGSLYDYVHKNHNVLELSQLLKFAIDVCKGMEYLHLNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLELMQRCWEAIPSDRPSFNVITNELENILQEIEIQKRMVLDIFSYFRRLDWMDLTAFFSPHSLADVEFFHVPLWAVAQREKGVHTSCDQYKVRKCKEAY 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2341 583 SMART serkin_6 288 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2341 583 CDD STKc_MAP3K-like 294 509 - -
Aed1g2341 583 Gene3D Transferase(Phosphotransferase) domain 1 455 524 - -
Aed1g2341 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Aed1g2341 583 ProSiteProfiles Protein kinase domain profile. 288 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2341 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 454 - -
Aed1g2341 583 MobiDBLite consensus disorder prediction 112 137 - -
Aed1g2341 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 454 - -
Aed1g2341 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 454 520 - -
Aed1g2341 583 Gene3D Transferase(Phosphotransferase) domain 1 366 454 - -
Aed1g2341 583 Pfam Protein tyrosine and serine/threonine kinase 288 454 IPR001245 GO:0004672|GO:0006468
Aed1g2341 583 ProSiteProfiles ACT domain profile. 187 261 IPR002912 -
Aed1g2341 583 SUPERFAMILY ACT-like 186 255 IPR045865 -
Aed1g2341 583 MobiDBLite consensus disorder prediction 109 137 - -
Aed1g2341 583 SUPERFAMILY Protein kinase-like (PK-like) 280 539 IPR011009 -
Aed1g2341 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 454 520 - -
Aed1g2341 583 Gene3D Phosphorylase Kinase; domain 1 277 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2341 Aed-Chr1 19442478 19451939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2341 24 518 MAP Kinase Kinase Kinase AT2G17700 46.741 1.46e-154 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aed1g2341 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2341 - - gmx:100782737 984.171