Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2336 ATGGCAGATCTTGTTAACTACAGGAATGCCGACCGTGACATCGACCAAGATGAATTGTCTTTAATCTGGATATCAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTTAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATCTATCTTTTTCACTTATTTATAACAACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTATCAAGGCACTGATATCTTCCGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTAATGCTTGATGACAGTAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACGAGACATCAGTTCTCCAGACGTTTCTGTTAGTCTGGCAAATACTTCTCCACAATCCTTTTACTCTGAGAATACCTTAAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCAAGTCATGGGTCTGCACCAGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAGTGCTAGTTATTTGAGCCCAAGGACAGATATTCTCCTCCCTAGGCCACTGGAGTCCAATGTGGTTTTAGACGTGCTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAACTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCCCGTCTAGTTGAAGCAATGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCCGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCGGGTCCACTTGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGGCAGCTCTTCACATTTGGTGATGGAACATTTGGAGTCCTAGGCCATGGAGATAGGGGAAATATTTCATATCCTAGAGAAGTAGAATCCTTATCTGGATTGAGGACAATAGCGGTTGCTTGTGGAGTGTGGCATACTGCAGCTGTCGTAGAGGTTATTGTGACACAATCAAGTGCTAGTGTGTCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGATAAGGATGCCCGGCTTGAACCAACTTGTGTACCTTCACTAATTGATTACAATTTTCATAGAATTGCTTGTGGACACAGTTTGACAGTAGGGCTGACAACATCCGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCCGATGGAAAGCTGCCATGTTTGGTTGAAGACAAGCTTGCAGGAGAATCCATTGAAGAAATTGCATGTGGGGCTTATCACGTTGCTGTTTTAACATCCAAAAATGAAGTTTACACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCGACTTTAGTTGAAACCTTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTACTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGCAGACAGGCATTTGGGTTCACTAGAAAGCGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCTAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTTATAAAATTGAATAAGGTTGCAGAATCGGGCAATAATAATCGGAAGAATGCTCTGCCTCGTTTGTCGGGTGAAAACAAGGACAGATTAGAGAAGTCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAGCTTGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAACCACAATCTTTGCTACAGCTCAGAGATGTTGTCTTGTCTACTGCTATTGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACATCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCTAAAAGTATTACTGATAGTTTGAAGAAAACAAACGAACTGTTGAATCAGGAAGTGTTGAAGTTACGTGGTCAGGTTGATACCCTGAGGCAGAGATGTGAACTGCAAGAAGTGGAGCTTCAAAGGTCAACAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCCGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCCGGTGCTTATGATGCCGAAAACATCAGACCAGCTTACCTGCCAAATGGCCTGGAGCCAAATGGCATCCACTATCCAGACTTAAATGGTGAACGTCACAACAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTGATGAATAGAACCAATGGCACTTTGCCTGGAAGCTATGGAACTAATCTTTACCAGCAAAACCGGGGATCTGTAACCTCTAATGGGACAGATGATTACCAGAATGTTAAATTACCAAATGGCAGCGGCATGATTCAGGCAAGCAGCAGTACTGTGTCAGATACTGTCGATGGTAGGGATTCTGGAGATTTCCAAGATGATGAGAGTGGTTTGAGATCAAGGAACGCCATAGTTCCTGCTAATAGTAATCAAGTTGAGGCCGAATGGATTGAACAATATGAACCTGGTGTCTACATTACACTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGTGATAAGGTATACGAAAAATACAATGTTCGAAGCACGGACAAGTCTTCTGGCCAAGTGGCACGTAGGGCAGAGGGTGCTGGTTCACCTGTTTTATAA 3273 0.4442 MADLVNYRNADRDIDQDELSLIWISSSGERNLKLSSVLRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGIKALISSGQGGRSKIDGWSDGGLMLDDSRDLTSNSPSESSVSASRDISSPDVSVSLANTSPQSFYSENTLNFERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKSASYLSPRTDILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEAMASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRGNISYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGESIEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVETLKDRHVKYIACGSNYSTAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFIKLNKVAESGNNNRKNALPRLSGENKDRLEKSELRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQPQSLLQLRDVVLSTAIDLKRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRGQVDTLRQRCELQEVELQRSTKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLEPNGIHYPDLNGERHNRAESISGSSLASIGLESSLMNRTNGTLPGSYGTNLYQQNRGSVTSNGTDDYQNVKLPNGSGMIQASSSTVSDTVDGRDSGDFQDDESGLRSRNAIVPANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRSTDKSSGQVARRAEGAGSPVL 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2336 1090 Pfam Transcription factor BRX N-terminal domain 846 881 IPR027988 -
Aed1g2336 1090 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 599 661 IPR017455 -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 668 687 - -
Aed1g2336 1090 SMART fyve_4 593 662 IPR000306 GO:0046872
Aed1g2336 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1073 - -
Aed1g2336 1090 ProSiteProfiles BRX domain profile. 1012 1067 IPR013591 -
Aed1g2336 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 667 IPR013083 -
Aed1g2336 1090 Gene3D - 12 100 IPR011993 -
Aed1g2336 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 362 372 IPR000408 -
Aed1g2336 1090 Gene3D - 141 431 IPR009091 -
Aed1g2336 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1073 - -
Aed1g2336 1090 Gene3D - 432 606 IPR009091 -
Aed1g2336 1090 Pfam FYVE zinc finger 595 661 IPR000306 GO:0046872
Aed1g2336 1090 Coils Coil 802 836 - -
Aed1g2336 1090 Coils Coil 851 871 - -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 965 995 - -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 427 IPR000408 -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 117 135 - -
Aed1g2336 1090 SUPERFAMILY RCC1/BLIP-II 206 596 IPR009091 -
Aed1g2336 1090 CDD FYVE_like_SF 604 657 - -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 320 IPR000408 -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 538 559 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 480 498 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 362 378 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 252 265 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 378 392 IPR000408 -
Aed1g2336 1090 PRINTS Chromosome condensation regulator RCC1 signature 271 287 IPR000408 -
Aed1g2336 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 375 IPR000408 -
Aed1g2336 1090 SUPERFAMILY PH domain-like 15 94 - -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 755 773 - -
Aed1g2336 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 438 485 IPR000408 -
Aed1g2336 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 269 317 IPR000408 -
Aed1g2336 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 321 372 IPR000408 -
Aed1g2336 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 544 591 IPR000408 -
Aed1g2336 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 376 424 IPR000408 -
Aed1g2336 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 490 539 IPR000408 -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 115 135 - -
Aed1g2336 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 207 268 IPR000408 -
Aed1g2336 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 255 265 IPR000408 -
Aed1g2336 1090 Pfam Transcription factor regulating root and shoot growth via Pin3 1011 1066 IPR013591 -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 965 983 - -
Aed1g2336 1090 ProSiteProfiles PH domain profile. 1 95 IPR001849 -
Aed1g2336 1090 SUPERFAMILY FYVE/PHD zinc finger 595 667 IPR011011 -
Aed1g2336 1090 MobiDBLite consensus disorder prediction 754 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2336 Aed-Chr1 19392356 19401571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2336 855 1083 Major Intrinsic Protein MIP AT1G31880 30.131 4.36e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2336 - - gmx:100783270 1986.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0692 7 5121295 5129038 Aed1g2336 1 19392356 19401571 PCT