Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2335 ATGCTTTGTTTTGTTCTTCTTCTCTTCACAGTCCCCGCCATCGTTCTCTCCTTCCCTTTGTTCCCCTCCGACAACATCACCCTCTACGGCGACGCCTTCTTCAGCCACAACGCCATCACTCTCACCACCCAACACTCCACATGCTCTTCCTCCTCCTCCAATATTGGAAGAGCCTTCTTCATCTACCCTGTCCGTTTTCTTGACCCTCAAACCAGCTCCACCGCCTCCTTCTCCTGCCGCTTCTCCTTCTCCATCCTCTCCTCCTCTTGCCCCTCCGGCGACGGCGACGGCCTCGCCTTCCTCATCGCCTCCTCCACCCACTTCCCCACTCTCTCCACCGGCTACATGGGCCTCCCTTCCCGTCAACACTCCTTTACCTCCTTCTTCGCCGTCGAATTCGACACCGCCTTTGACCCCTCCCTCGGCGACATCAACGACAACCATGTCGCCGTCGACATCGACACTGTCTCCTCTTTCGCCTCCGTCGACGCCTCCTCCCGCGGCATTGACCTCAAGAGCGGGAGAATCATCACTGCATGGGTCGAGTACAGACATGCAATGAGAATGGTACGTGTGTGGCTTGCTTATTCCTCAACTAGACCTCCCACTCCGATTCTTGCTACTCAAATTGACCTTTCTGAGAAACTTGAGGACTTCATGCACGTTGGTTTCACTGCCTCCAATGGGGAAGGGTCAAGTGTGCACCTTGTTCATCATTGGCAGTTCAAGACTTTTGGCTACGACTCTCACTCCATGGATGTTGTGGAAGAAGGAGATTGTTTCTTGTGTTATGAAGGGGATTCTTCAAGGAGTGATCAAAGTTCCAGCGTGTCGAATAAGGACAGTGAGAGTGAGAGGAAGAAAAAGATTGGGGAAATGGCTCTAGGGTTGGGAGGCTTGGCCGCGTTTCTGGTCTCGGGTTTGGCGGCAATGGTTGTGGTGTGTGTTTTCTTGACAAAGAAAAAGAGTTGTATTAGGAAGAATAGGGAAGACCAAGGGCAAAGTTGTAGGTTTCAGACGAGTAAAGTGCCAACTAGGTTGTCACTTTCTGATATTAAATCTGCCACAAAGGGGTTCAGTCGAGATAGGCTTGTTGGGGAGGGTGCATCTGCAAAGGTGTATAAAGGGTATCTTCCCTTAGGAGGAGATGTGGCAGTGAAGAGATTTGAGAGGGATAATGGTAATTTGGATGGTTTGCATAACCCTTTTGCCACTGAGTTTGCCACCATGGTGGGTCACTTGCGGCACAAGAATCTTGTTCAGCTCAAGGGGTGGTGCTGTGAGGGGAATGAGTTGGTCCTGGTTTATGAGTATCTTCCCAATGGGAGCCTCAACAAGGTTTTGCACAGAAACTTCAATTCTTCCATTGTTCTCTCGTGGCAGCAAAGACTGAACATTGTTCTCGGGGTTGCTTCTGCTCTCACCTACCTTCACGAGGAGTACAATCTTAAAATATCTAATGGTATTGAAGGTGAGACTCAGAAGTGCTCTGTTATAGTTGGGTACTGTTTAAAGGGGCCTGTGATTTTTACTGATGCTGTTACATGGTTTTGTGAGGATTGTGCAACAAAGCTAGGGGTGCCACCTGATCTTGACCAATCTATACCTATCTCATCTGTAACAAGAAAAAAATGCAGAGAGAGAGTAAAAAAGCACAATCAACAGCAAAAAAAGAAGGTTAAAAAGAACCAGAAGGAAGGAAAAGCTAACTATGGCTTAGTTGCTAAAACAAAGGGTGTGTTATCTGGTAATCACAGTTCACCTGAGCTGAAGCATCCTCAATGTAGTAACGGAGGTGAAGAAGAATGTGAGTTGAATTTTCTGGTTAATAGGGGAAATATGTACTTCTGCAATGCAACTATTGGTACTGTCAATGGACTTCTAGCTCATACATCCGATTTAGCATGCTCCAAAGTTGTGGAGGAGACAGGACATTTCCCAGAAGTGCTTCATGCAGAATTGCTTCCCAGATCTATGGTGTTGCCTGAAAGATTCAAGAGTATGAAGCCAACTGATCAGGACATTGCTCTTTTTTTCTTTCCTGACAGTGAAAGATCTGAGAAGGACTTTGATGCGCTAGTTCAATATATCATGTTCCATGAAAATGTCATAAGATTTGTGGCTAAAAGTGCAGAGCTTTTAGTTTTTCCTTCTATTGAGCTTCCAATCAAATATTGGAGATTTGAAGCCAAGTATTATTTGTGGGGTGTCTTCAGAAGAAAGCAAACTTCCGAAGATACAAATGATGGCATGATGCTTGTGTGCAGAGATTGA 2274 0.4657 MLCFVLLLFTVPAIVLSFPLFPSDNITLYGDAFFSHNAITLTTQHSTCSSSSSNIGRAFFIYPVRFLDPQTSSTASFSCRFSFSILSSSCPSGDGDGLAFLIASSTHFPTLSTGYMGLPSRQHSFTSFFAVEFDTAFDPSLGDINDNHVAVDIDTVSSFASVDASSRGIDLKSGRIITAWVEYRHAMRMVRVWLAYSSTRPPTPILATQIDLSEKLEDFMHVGFTASNGEGSSVHLVHHWQFKTFGYDSHSMDVVEEGDCFLCYEGDSSRSDQSSSVSNKDSESERKKKIGEMALGLGGLAAFLVSGLAAMVVVCVFLTKKKSCIRKNREDQGQSCRFQTSKVPTRLSLSDIKSATKGFSRDRLVGEGASAKVYKGYLPLGGDVAVKRFERDNGNLDGLHNPFATEFATMVGHLRHKNLVQLKGWCCEGNELVLVYEYLPNGSLNKVLHRNFNSSIVLSWQQRLNIVLGVASALTYLHEEYNLKISNGIEGETQKCSVIVGYCLKGPVIFTDAVTWFCEDCATKLGVPPDLDQSIPISSVTRKKCRERVKKHNQQQKKKVKKNQKEGKANYGLVAKTKGVLSGNHSSPELKHPQCSNGGEEECELNFLVNRGNMYFCNATIGTVNGLLAHTSDLACSKVVEETGHFPEVLHAELLPRSMVLPERFKSMKPTDQDIALFFFPDSERSEKDFDALVQYIMFHENVIRFVAKSAELLVFPSIELPIKYWRFEAKYYLWGVFRRKQTSEDTNDGMMLVCRD 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2335 757 CDD lectin_legume_LecRK_Arcelin_ConA 17 246 IPR001220 GO:0030246
Aed1g2335 757 Pfam Protein tyrosine and serine/threonine kinase 362 480 IPR001245 GO:0004672|GO:0006468
Aed1g2335 757 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 18 483 - -
Aed1g2335 757 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 245 IPR013320 -
Aed1g2335 757 SUPERFAMILY Protein kinase-like (PK-like) 336 481 IPR011009 -
Aed1g2335 757 Gene3D - 16 257 - -
Aed1g2335 757 ProSiteProfiles Protein kinase domain profile. 359 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2335 757 Gene3D Phosphorylase Kinase; domain 1 319 438 - -
Aed1g2335 757 PANTHER - 18 483 - -
Aed1g2335 757 Coils Coil 546 566 - -
Aed1g2335 757 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Aed1g2335 757 Gene3D Transferase(Phosphotransferase) domain 1 439 488 - -
Aed1g2335 757 Pfam Legume lectin domain 17 245 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2335 Aed-Chr1 19375787 19382568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2335 1 500 Receptor kinase-like Gene Family AT5G42120 46.667 9.27e-141 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aed1g2335 Lectin_legB 2e-53 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2335 - - gmx:100783805 742.651