Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2333 ATGAATGAAGCCGTTTGTTCTGTAACTTTGCATGCATTAAAAGGACTATCATATCTCACAAAGTACAAAGAAAAATCAGAGTGTACGTACCTGATCACAAGTTCATTAGATCAAAGCTCCAAGAACAAAGAGATTGAGGCTTTGAGCAGCAACACAACTAGAAGGCAAAGAAAATGGAGGGGTTTTGGAGCATGTTTTGTGGGGAATCTGGTTGTTCAGAGACAGGAGGGAATGCATGCAGTTATGATTTTAAATCCTTCCACATGTGTCAACCATTTTTTGTTCATTTGCATTCATGTGTTGTTGTTGATCATTATCTTATTGACAATCCTCAAGAAGTCATCACAGAAACCACCATCTAAAGGTCTAGTTCAAGTGCCAACTTATTCTTATTCCAAATTGCAGCTAGTGTCTGCCATAGCCAATGGCTCTCTGGGGCTGATACATTTGTGCTCAGGCATTTGGCTTTTAGAGGAGAATCTCAGGAGAAAACAAACTGTTTTGCCTCTTGATTGGTGGATGCTAGAAAGCATTCAGGGATTGATATGGTTGCTGGTGGGTTTTACAATAAGTCTTCAGCTTAAACAACTTCCAAAAGCATGGTTATTTATATTTACTGTTGTAATCTTCTTGGTTTCTAGTATTCTCTGTGCTTTGTCCTTGTTTTATGCAATTAGTAGCAGAAAATTGTCCCTGAAAGTAGCTTTGGATGTTTTATCTTTTCCAGGGATGATTTTTTTGCTATTATGCATTTACAAGGAATCTAAGTATAGAGACATTGAGAGAGAAACTAATGGAACTCTATACACCCCTTTAAAGGAAGATTCCAATAATGTTGATTCTTTCAGTTATGTTACACTATTTGAAAAAGCTGGACTGTTCAGCAGGATGACATTTTGGTGGATGAATCCATTAATGAAAAGTGGTAAGGAGAAAACCCTTCTGGATGAGGATATACCGAAGTTGGGGGATGCAGATCAAGCAGAAAGTTGTTATTTTCTGTTTCTAGATCAATTGAACAGACAGAAACAGAAAGAACCATCATCACAACCATCAGTTTTGAAGACAATAGTTATGTGCCATTGGAAGGAGATTTTGATATCAGGATTCTTTGCATTGCTGAAGGTAGTTACTCTCTCATCTGGCCCTTTGCTTCTGAATTCCTTTATATTGGTTGCTGAGGGTAATGAGAGTTTCAAATATGAAGGTTATGTGTTGGCCTTATCACTAGTCTTTACAAAGATCATAGAATCCTTGTCACAAAGGCAGTGGTACTTCCGCACCAGACTCATTGGTATTAAAGTTAGATCGCTGCTCATTGCAGCAATTTATAAAAAGCAACTGAGGTTATCCAATACTGCAAGATTGGTGCACTCTGGTGGTGAAATAATGAACTATGTGAATGTGGATGCTAATAGAATTGGAGAGTTTCCCTATTGGTTTCACCAGACTTGGACAACAAGCGTCCAGTTATGTATTGCATTAGTAGTGCTTTTCCGTGCTGTTGGGCTAGCAACATTCGCTTCATTAGCAGTGATAATTCTAACAGTGATTTGCAATACTCCACTTGCAAAGTTGCAGCATAAGTTTCAGAGAAAACTTATGGTGGCACAAGATGAGAGATTGAAGTCCACTTCTGAGGCTCTTGTGAACATGAAGGTTTTGAAGTTATATGCATGGGAAACCAGTTTTAGAAATGTAATTGAAAGGTTGAGGGATGTGGAACTCAAAAGTTTGTCTGTGGTGCAATTAAGAAGGTCATATAGCAACTTTCTCTTTTGGGCCTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCGTGTTACTTGCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTTCAAGATCCTATTAGAACCATCCCTGATGTCATTGGAGTGGTCATTCAAGCAAAAGTTGCATTTGCAAGGATTATTGAAGTTCATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAAACGGGTACAATACGGGATAATATATTATTTGGATCAACTATGGATGCTGAAAAATATCAAGAAACACTTCATAGGTCTTCACTAGTGAAGGACCTTGAGTTGTTTCCACATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTTAACCTGAGTGGCGGTCAGAAGCAGCGAATTCAACTGGCTCGCGCTCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATGCAGTGCTGTTGATGCACACACTGCCACAAATTTGTTTAATGAATACATCATTGAAGGACTTGCAGGGAAGACAGTCTTACTGGTGACTCATCAAGTTGATTTTCTTCCAGCCTTTGATTCTGTTTTGTTGATGTCTAATGGGGAAATCATACAAGCTGCTCCTTATCATCATCTCTTGAGCTCAAGCCAAGAATTTCAGGACCTTGTCAATGCTCACAAGGAAACTGCTGGTTCTGACAGGCTTGTGGATGTCACTTCTTCCAAGGAACACTCAGATACTGCTACAGAGATTAGTAAAATATACATGGAGAACCAGTTTGAAACATCACAAGAAGGTCAATTAATTAAGAAGGAAGAGAGAGAGAAAGGAAACAAAGGGTTCAAGCCTCACTTACAGTATCTGAATCAGGACAAAGGATATATATACTTCTCTGTGGCCTCTATTTCTCACCTTATATTTGTGATTGGCCAGATATTTCAGAACTTATGGATGGCTTCTAATGTTGACAATCCTTATGTCAGCACTTTGCAATTGATTGCTGTGTACTTGTTGATAGGGTTTATTTCTGCATGTTTCTTGTTCATCAGAAGTCTTGTTGTGGTTTCTATGAGTATTCGGTCATCAAAATCTTTATTTTTACAGCTACTAAACTCCCTATTTCGTGCACCTATGTCATTTTATGACTCCACTCCTTTGGGAAGGATACTTAGTAGGGTCTCCTCAGATCTAAGCATTGTCGATCTTGATGTCCCATTTGGCCTTATTTTTGCTGTGGGAGCTACTATAACTTGTTATTCAAATCTTGCAGTTATAGCAGCCATTACTTGGCAAGTCTTGTTTATCTCTATACCAATGCTTTACATAGCATTTCGCTTGCAGAGATATTACTATGCCACTGCAAAAGAATTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAATCATCTTGCCGAGTCTATTGCTGGAGTTGTGACAATAAGGGCTTTTGAGGAGGAGGATCGTTTCTTTTCAAAGAATCTTGATCTAATTGATGTCAATGCCAGTCCTTATTTTCATACCTATGCAGCAAATGAGTGGTTAATGCTAAGGTTAGAAACAATCAGTGCAGTGGTTTTTGCATCTGCAGCACTTTGTATGGTGGTACTTCCAACCGGGACTTTCACCTCTGGATTTGTTGGCATGGCTCTCTCCTATGGCCTTTCATTAAACTCTTCCCTAGTATTTTCAATTCAAAACCAATGCACTCTTGCAAATCAAATCATATCAGTAGAGAGGCTAAATCAATACATGGATGTACCAAGTGAGGCCCCGGAAGTAATAGAGGGAAATCGTCCTCCTGCAAATTGGCCAGCTGAGGGAAAAGTAGAATTACATGATTTGAAGATAAGGTACCGGCCTGATGCACCACTAGTACTACGTGGGATCACGTGCACATTTGAAGGAGGCCACAAGATTGGTGTTGTTGGAAGAACAGGTAGTGGAAAATCCACTCTTATAGGTGCCTTATTCCGTCTAGTGGAGCCAGCAGGTGGAAAAATAGTAGTTGATGGCATAGACATTTGTTCTATTGGACTTCATGACTTGAGGTCACGCTTTGTTGTTGAAGCTGGGGCAAATTGGAGCATGGGACAAAGACAGTTATTCTGCTTGGGGCGTGCCCTATTGAGGAAAAGTCGGATACTAGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACAGATTTGATTCTACAAAAAACAATTAGGACAGAGTTTGTAAATTGCACTGTAATCACAGTAGCCCACAGAATACCAACTGTGATGGATTGCACCAAGGTTGTTTCCATTCGTGAAGTCTGCTGGATCACATTAGAGCTATAA 4113 0.3963 MNEAVCSVTLHALKGLSYLTKYKEKSECTYLITSSLDQSSKNKEIEALSSNTTRRQRKWRGFGACFVGNLVVQRQEGMHAVMILNPSTCVNHFLFICIHVLLLIIILLTILKKSSQKPPSKGLVQVPTYSYSKLQLVSAIANGSLGLIHLCSGIWLLEENLRRKQTVLPLDWWMLESIQGLIWLLVGFTISLQLKQLPKAWLFIFTVVIFLVSSILCALSLFYAISSRKLSLKVALDVLSFPGMIFLLLCIYKESKYRDIERETNGTLYTPLKEDSNNVDSFSYVTLFEKAGLFSRMTFWWMNPLMKSGKEKTLLDEDIPKLGDADQAESCYFLFLDQLNRQKQKEPSSQPSVLKTIVMCHWKEILISGFFALLKVVTLSSGPLLLNSFILVAEGNESFKYEGYVLALSLVFTKIIESLSQRQWYFRTRLIGIKVRSLLIAAIYKKQLRLSNTARLVHSGGEIMNYVNVDANRIGEFPYWFHQTWTTSVQLCIALVVLFRAVGLATFASLAVIILTVICNTPLAKLQHKFQRKLMVAQDERLKSTSEALVNMKVLKLYAWETSFRNVIERLRDVELKSLSVVQLRRSYSNFLFWASPVLVSAASFGACYLLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIIEVHGKFAYVSQTAWIQTGTIRDNILFGSTMDAEKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPCSAVDAHTATNLFNEYIIEGLAGKTVLLVTHQVDFLPAFDSVLLMSNGEIIQAAPYHHLLSSSQEFQDLVNAHKETAGSDRLVDVTSSKEHSDTATEISKIYMENQFETSQEGQLIKKEEREKGNKGFKPHLQYLNQDKGYIYFSVASISHLIFVIGQIFQNLWMASNVDNPYVSTLQLIAVYLLIGFISACFLFIRSLVVVSMSIRSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFAVGATITCYSNLAVIAAITWQVLFISIPMLYIAFRLQRYYYATAKELMRMNGTTKSFVANHLAESIAGVVTIRAFEEEDRFFSKNLDLIDVNASPYFHTYAANEWLMLRLETISAVVFASAALCMVVLPTGTFTSGFVGMALSYGLSLNSSLVFSIQNQCTLANQIISVERLNQYMDVPSEAPEVIEGNRPPANWPAEGKVELHDLKIRYRPDAPLVLRGITCTFEGGHKIGVVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDICSIGLHDLRSRFVVEAGANWSMGQRQLFCLGRALLRKSRILVLDEATASIDNATDLILQKTIRTEFVNCTVITVAHRIPTVMDCTKVVSIREVCWITLEL 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2333 1370 Pfam ABC transporter 1222 1281 IPR003439 GO:0005524
Aed1g2333 1370 CDD ABCC_MRP_domain1 655 796 - -
Aed1g2333 1370 Gene3D ABC transporter type 1, transmembrane domain 853 1186 IPR036640 GO:0005524|GO:0016021
Aed1g2333 1370 Gene3D ABC transporter type 1, transmembrane domain 337 659 IPR036640 GO:0005524|GO:0016021
Aed1g2333 1370 Pfam ABC transporter 656 748 IPR003439 GO:0005524
Aed1g2333 1370 Gene3D - 661 826 IPR027417 -
Aed1g2333 1370 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1282 1363 - -
Aed1g2333 1370 ProSitePatterns ABC transporters family signature. 721 735 IPR017871 GO:0005524
Aed1g2333 1370 Gene3D - 1189 1283 IPR027417 -
Aed1g2333 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1360 IPR027417 -
Aed1g2333 1370 CDD ABC_6TM_ABCC_D1 367 654 IPR044746 GO:0140359
Aed1g2333 1370 Pfam ABC transporter transmembrane region 891 1143 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2333 1370 Pfam ABC transporter transmembrane region 365 631 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2333 1370 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 366 646 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2333 1370 Gene3D - 1284 1365 IPR027417 -
Aed1g2333 1370 SMART AAA_5 1231 1363 IPR003593 -
Aed1g2333 1370 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 127 656 - -
Aed1g2333 1370 SUPERFAMILY ABC transporter transmembrane region 891 1185 IPR036640 GO:0005524|GO:0016021
Aed1g2333 1370 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 127 656 - -
Aed1g2333 1370 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 655 1284 - -
Aed1g2333 1370 CDD ABC_6TM_ABCC_D2 887 1180 IPR044726 GO:0140359
Aed1g2333 1370 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 899 1168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2333 1370 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 562 819 IPR003439 GO:0005524
Aed1g2333 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 819 IPR027417 -
Aed1g2333 1370 SUPERFAMILY ABC transporter transmembrane region 354 654 IPR036640 GO:0005524|GO:0016021
Aed1g2333 1370 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1282 1363 - -
Aed1g2333 1370 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 655 1284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2333 Aed-Chr1 19357236 19365243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2333 660 811 Calmodulin-binding Proteins AT2G36910 32.051 4.78e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2333 K05666 - gmx:100784336 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2333 1 19357236 19365243 Aed1g2333 1 19357236 19365243 ECH
Aed7g0688 7 5095793 5102073 Aed1g2333 1 19357236 19365243 PCT