Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2315 ATGGAACACCCCTCAGATTCTCCACCACCACCACCACCAAGAACAACCCTTAAAACGTACAAAATAACCGCCACGTCAATCTCCTACACGAAACCCATCACCAAACCCTCATTGATCTCCTCTCTCCTGTTCACCCCATGCACCGCCACCTCACCAACTTACATCCTCAAAGACATTTCCTTCAGCGCTCACCCCTCTCAAATCCTTGCCGTGGTGGGGCCCAGCGGCGCCGGAAAATCCACCCTCCTCGACATCCTGTCCGCACGCACCCTCCCCTCCCACGGCAGCCTCTCTCTGAACTCCTCCCCTCTAAACCCCTCCACATTCCGCAAACTCTCTTCCTACGTCCCCCAACACGACCACTGCCTCCCACTTCTCACCGTCTCCGAAACCTTCCTCTTCGCCGCCAACCTCCTCCGACCCAAAACCCCCGACCTTGCCTCCATCGTCTCCTCCCTCCTCTCCGAACTCAGACTCACCCACCTCTCCAACACGCGCCTCGCGCGTGGCCTCTCCGGCGGTGAACGCAGAAGAGTCTCCATCGGCCTCAGCCTCCTCCACGACCCCGCGGTGCTACTCCTCGACGAACCCACTTCGGGTCTCGACAGCACTTCGGCATTCAAAGTCATGCAGATCCTGAAACAAACATGCGTCTCTCGCAACAGAACCATCATCCTCTCCATCCACCAACCCAGCTTCAAGATCCTCGCTTGCATCGATAAAATCTTGTTACTTTCCAAAGGACAAGTGGTTCATCACGGAAGCGTTGCAACGCTTCAATCCTTCTTGCACTCCAATGGCTTCACCGTCCCTCACCAACTCAACGCATTGGAATACGCTATGGAGATCTTGAGCCAGTTGAACGCGGCCAAGCCTATCACTCCACCGAGTATTCCTGAGTCACCTCAGAGTTCGATTTCGAGTGCAAGTACTTCAACGAGTTTGGTTTCTGAGAGTAGTAGAAGAGAGACTATAAGGTACAGAAGCTCCAGGGTGCATGAGATTTTCACTCTTCATAACAGGTTTTGGAAGATTATTTACCGAACTAGGCAACTTCTTCTGACCAACACTGCTGAAGCGCTTCTTGTGGGTCTTGTATTGGGAACTATTTATATAAACGTAGGGTTTGGTAAAGAAGGGATTGAGAAAAGGTTTGGTCTTTTTGCCTTCACTCTCACGTTTCTCTTATCCTCCACCACCGAAACCCTTCCAATCTTCATCAACGAGAGGCCAATCTTGCTGAGAGAAACTTCAAGTGGGGTTTACAGGCTTTCCTCTTATCTCGTTGCAAACACGCTTGTTTTCTTGCCCTACTTGCTCGTTGTTGCTGTTATATACTCCATCCCGGTTTACTTCTTGGTGGGTCTTTGTGCTTCGTGGCTTTCTTTTGCTTACTTTGTTTTGGTCATTTGGGTCATTGTTCTAATGGCCAACTCGTTCGTTCTCTTCTTGAGCTCTCTCGCGCCGAACTACATTGCCGGAACTTCGCTCCTAACGGTGCTTCTGGCGGCGTTTTTTCTGTTCTCTGGATACTTTATCTCAAAGGAAAGCTTGCCAAAGTACTGGCTATTCATGCATTTCTTGTCTATGTATAAATACGCTCTTGACGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGTCACGGTGTTTGATATGGTACCAAGAGAATGATCAACAGTGCATGGTAACTGGTGCTGACATGTTGCAGAAGAAAGGACTCGGAGAGAGTCAAAGGTGGACCAACGTCTACTTCTTGATCGGCTTCTTTGTCATGTATCGTGTGCTTTGCTTCTTGGTCACGGGTCTCTCTTATGCCTTTGGTTGCAAAGAGAGGGAAGAATCCAAAGCTGTCCTTATCATCATGGAAAAGGTTTTTGTCGTGTGGCTAAGTTGCTTTCTTGCTGCTATTCTTTTGTATTGTCTGTCTGCTGTGACTGTACGTGAGCGAGCTATAGTGTTTTGTTCACGGGTTCTTCATATCATAAGTGATGTGGTGTCCCGTGAACTTGTTCAGTGTTGGCTTGGGGGTTGCATATAA 2040 0.4941 MEHPSDSPPPPPPRTTLKTYKITATSISYTKPITKPSLISSLLFTPCTATSPTYILKDISFSAHPSQILAVVGPSGAGKSTLLDILSARTLPSHGSLSLNSSPLNPSTFRKLSSYVPQHDHCLPLLTVSETFLFAANLLRPKTPDLASIVSSLLSELRLTHLSNTRLARGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQTCVSRNRTIILSIHQPSFKILACIDKILLLSKGQVVHHGSVATLQSFLHSNGFTVPHQLNALEYAMEILSQLNAAKPITPPSIPESPQSSISSASTSTSLVSESSRRETIRYRSSRVHEIFTLHNRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINVGFGKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLVANTLVFLPYLLVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKESLPKYWLFMHFLSMYKYALDALLINEYSCLVSRCLIWYQENDQQCMVTGADMLQKKGLGESQRWTNVYFLIGFFVMYRVLCFLVTGLSYAFGCKEREESKAVLIIMEKVFVVWLSCFLAAILLYCLSAVTVRERAIVFCSRVLHIISDVVSRELVQCWLGGCI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2315 679 MobiDBLite consensus disorder prediction 295 317 - -
Aed1g2315 679 Gene3D - 45 291 IPR027417 -
Aed1g2315 679 SMART AAA_5 65 249 IPR003593 -
Aed1g2315 679 MobiDBLite consensus disorder prediction 300 317 - -
Aed1g2315 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 263 IPR027417 -
Aed1g2315 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 6 603 - -
Aed1g2315 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 6 603 - -
Aed1g2315 679 Pfam ABC-2 type transporter 229 288 IPR043926 GO:0140359
Aed1g2315 679 Pfam ABC transporter 56 199 IPR003439 GO:0005524
Aed1g2315 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 272 IPR003439 GO:0005524
Aed1g2315 679 Pfam ABC-2 type transporter 334 543 IPR013525 GO:0016020|GO:0140359
Aed1g2315 679 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2315 Aed-Chr1 19184497 19187481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2315 55 308 Calmodulin-binding Proteins AT2G36910 28.517 2.12e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2315 K05681 - gmx:100790712 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2315 1 19184497 19187481 Aed1g2315 1 19184497 19187481 ECH