Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2313 ATGGCTTCCGATCTTGAGCTTAAGGCCAAAGAGGCTTTCGAAGATGATAACTATGATCTAGCCAACGACCTCTTAACTCAGGCCATTGATCTCAGCCCCAACAACGCAGACCTATATGCTGATCGTGCCCAAGTCAACATCAAAGTCAACAACCTCACCGGGGCTGTTGCTGATGCAAACAAGGCGATTGAGTTGAATCCTTCTCACTCAAAGGCATATTTGCGCAAAGGTACTGCATGCATCAAGCTTGAGGAATATCAGACTGCTAAAGCAGCTCTAGAGACGGGTGCTTCATTGGCTCCAGGAGAATCTAGATTTACTGATTTGATCAAACAGTGTGATGAGCTGATTGCAGAAGAATCTGGTGTCATGCCCATACAAGAAGAGAGCACAACACAGGGTGCTGCAGCTGCTACAGAAGTTGTTGAGCCAGAGAATGATCTTCCAGAGCCACCTACAGTAACAGTGGTTAAACCTAAATACAGGCATGAATTCTTCCAGAAACCTGATGAGGTGGTTATTACCATATTTGGAAAGGGCATTCCACGAGACAGCATTGTTATTGATTTTGGTGAACAAATACTAAGTGTCACAATTAATATCCCTGGCGAAGAGGCATATGTCTTCCAACCTCGCTTATTTGGAAAGATCATACCCACCAAATGCCGGTATGAAGTCTTGTCCACCAAAATTGAAATTCGACTAGCGAAAACAGAACATATCCAATGGATATCTCTAGAATACAACGAGGGTAGCACAGTTCCACCGAAGGTTAATGTTTTGCCAGTTGCTGGAGTTGAAAGACCTACTTATCCATCCTCAAAACCAAAAAGAACAGATTGGGATAAGCTTGAAGCTGAAGTTAAGAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCCGCTCTTAACAAGTTTTTCCGTGAGATATATCAAGATGCAGATGAGGACACCAGAAGAGCAATGAGCAAATCATTTGTGGAGTCAAATGGAACAGTGCTGTCTACAAACTGGAAAGAAGTGGGAACAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTGA 1086 0.4328 MASDLELKAKEAFEDDNYDLANDLLTQAIDLSPNNADLYADRAQVNIKVNNLTGAVADANKAIELNPSHSKAYLRKGTACIKLEEYQTAKAALETGASLAPGESRFTDLIKQCDELIAEESGVMPIQEESTTQGAAAATEVVEPENDLPEPPTVTVVKPKYRHEFFQKPDEVVITIFGKGIPRDSIVIDFGEQILSVTINIPGEEAYVFQPRLFGKIIPTKCRYEVLSTKIEIRLAKTEHIQWISLEYNEGSTVPPKVNVLPVAGVERPTYPSSKPKRTDWDKLEAEVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2313 361 Pfam SGS domain 280 359 IPR007699 -
Aed1g2313 361 Pfam CS domain 162 237 IPR007052 -
Aed1g2313 361 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Aed1g2313 361 CDD p23_CS_SGT1_like 164 247 - -
Aed1g2313 361 SUPERFAMILY TPR-like 5 113 IPR011990 GO:0005515
Aed1g2313 361 SUPERFAMILY HSP20-like chaperones 150 256 IPR008978 -
Aed1g2313 361 ProSiteProfiles SGS domain profile. 270 361 IPR007699 -
Aed1g2313 361 SMART tpr_5 70 103 IPR019734 GO:0005515
Aed1g2313 361 SMART tpr_5 2 35 IPR019734 GO:0005515
Aed1g2313 361 SMART tpr_5 36 69 IPR019734 GO:0005515
Aed1g2313 361 ProSiteProfiles CS domain profile. 158 247 IPR007052 -
Aed1g2313 361 Pfam Tetratricopeptide repeat 36 69 IPR019734 GO:0005515
Aed1g2313 361 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Aed1g2313 361 Gene3D - 159 249 IPR008978 -
Aed1g2313 361 PANTHER PROTEIN SGT1 HOMOLOG 1 361 IPR044563 GO:0051087
Aed1g2313 361 PANTHER PROTEIN SGT1 HOMOLOG ISOFORM X1 1 361 - -
Aed1g2313 361 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2313 Aed-Chr1 19171642 19175659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2313 K12795 - gmx:100777554 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2313 1 19171642 19175659 Aed11g1743 11 20974015 20979449 ECH
Aed1g2313 1 19171642 19175659 Aed1g2313 1 19171642 19175659 ECH