Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2311 ATGGCCGAGGACTGGGATCTGTTTGCCATCGTGAGAAGCTGCCAATCTGCCACCACAACAATTCCACAAACTACCACCAATAACACTTCCTCTTCCTTAATCACTTCCACTACTATCATGGAAGAGAAATATGATGCATTTTCCTTTCCCAATAATATGGTGCAACCCATAATCAATGAGTTTGAAGAGCTACACCAATTGTTCACACCCTTCAACCCCACCACCAACACTAGTGCTCCTGGCATCAATCCCAATTCCCTGCCTTATTTTGCACCACAGGAAGAAAGGCACCAAATTAGTGACCACCTTAGTATTTGGCCTCATTCTGTGCCAGAACACCCCTCCACTCCCAGATTCCATGGCCAGCAACAACAGATCAATCAACTACAGGTACTTCAGAAACACGAATTTCAACTACCCCAGAACAATTCCACCACTGTTTCACCAAACACACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAGCAGAAGAAAATGGTGTGCCATGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCGTGGCGAAAATACGGACAGAAACCAATTAAGGGTTCTCCATATCCAAGGAACTACTATAGGTGCAGCAGTTCGAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGTAACACTGACACCGACATGTTCATCGTTACCTACACCGGAGACCACTCGCATCCCCGTCCAACTCACCGGAACTCGCTCGCTGGAAGTACCCGGAATAAAACTCCGGCCACGAATCCGCCGCCGTCACTCTCCTCCTTCCAAGCTACCCCTTTTTCTTCTACTTCTTCTTCACCGCCACACTCTCCGACGTCGCCGTCGGAGGAGCCACCGGAAACCGGAGATGCAGAACCCGACCCGGGAATGGAAACCGACGTGGACGATGACGGTGACTTTCGGTAA 936 0.4861 MAEDWDLFAIVRSCQSATTTIPQTTTNNTSSSLITSTTIMEEKYDAFSFPNNMVQPIINEFEELHQLFTPFNPTTNTSAPGINPNSLPYFAPQEERHQISDHLSIWPHSVPEHPSTPRFHGQQQQINQLQVLQKHEFQLPQNNSTTVSPNTQPQTPKSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTDTDMFIVTYTGDHSHPRPTHRNSLAGSTRNKTPATNPPPSLSSFQATPFSSTSSSPPHSPTSPSEEPPETGDAEPDPGMETDVDDDGDFR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2311 311 MobiDBLite consensus disorder prediction 139 158 - -
Aed1g2311 311 Pfam WRKY DNA -binding domain 180 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed1g2311 311 SUPERFAMILY WRKY DNA-binding domain 173 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed1g2311 311 MobiDBLite consensus disorder prediction 139 168 - -
Aed1g2311 311 Gene3D WRKY domain 161 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed1g2311 311 SMART WRKY_cls 178 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed1g2311 311 MobiDBLite consensus disorder prediction 241 280 - -
Aed1g2311 311 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 291 IPR044810 GO:0003700
Aed1g2311 311 MobiDBLite consensus disorder prediction 230 311 - -
Aed1g2311 311 ProSiteProfiles WRKY domain profile. 173 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed1g2311 311 MobiDBLite consensus disorder prediction 290 311 - -
Aed1g2311 311 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2311 Aed-Chr1 19165258 19167148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2311 157 304 WRKY Transcription Factor Family AT5G52830 63.816 2.73e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed1g2311 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2311 K13425 - gmx:100792164 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2311 1 19165258 19167148 Aed7g0654 7 4838345 4839723 ECH
Aed2g0627 2 4535860 4538034 Aed1g2311 1 19165258 19167148 ECH
Aed3g0581 3 4105222 4107254 Aed1g2311 1 19165258 19167148 ECH
Aed1g2311 1 19165258 19167148 Aed1g2311 1 19165258 19167148 ECH
Aed7g0654 7 4838345 4839723 Aed1g2311 1 19165258 19167148 PCT