Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2306 ATGGTGTCCAAAAACCCGAAGCCTTCTGAGGCTTTCTACTTGGACCCCTCTGGCATGTGTCTCCCCGGAATCCTCCCCTTCGCCGCCGCTACCGCTGCCACCGCAGCAGGTTCCTTTGAGGACCCTACAAAGAAGACTCGCAAGCCTTACACTATCACCAAGTCTAGGGAGAGTTGGACCGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAATTATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATACGTAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTTATCCATATCCTCAGAAAGCTTCAAAAAATGCTCCAGTACTCTCACAAGTATTGGGATCCTTTCAATCATCATCACCTTTGCTTGAACCTGGATACATAGTAAAGCATGACTCTTCAGTAATGCCTAAATCTCCTATTATTAACACTGCAGTGTCTTCTTGGTCAAACAACTCTCTGCAGAAAACCACCAACGTATTGCATGGGCAAAAAGTGAATAATTGTTGCAGTAGCAGTGAAAGTCCTAGAGCACAGTTGGTTGGTGAATCTAATGGTCAACGGAATAATAGTCATCCACTGAGAGGCAAGGTTCTTCCGGATTTTGCTGAAGTGTACAGCTTCATTGGCAGTGTATTTGATCCAAAACTTACTGGACATGTACAGAAACTAAAAAGAATGGACCCTATTGATGTTGAGACGGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGCAAGCCCAGATTTTGAGGACCATAGAAGGCTGCTTGCATCATATGAGGTGGAACCTGAGACTGATAACTATATCAATGCAGATCGAACCATGCTTGATGTGCAGTTGAAGAGTGCTACTTAG 945 0.4402 MVSKNPKPSEAFYLDPSGMCLPGILPFAAATAATAAGSFEDPTKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAYPYPQKASKNAPVLSQVLGSFQSSSPLLEPGYIVKHDSSVMPKSPIINTAVSSWSNNSLQKTTNVLHGQKVNNCCSSSESPRAQLVGESNGQRNNSHPLRGKVLPDFAEVYSFIGSVFDPKLTGHVQKLKRMDPIDVETVLLLMRNLSINLASPDFEDHRRLLASYEVEPETDNYINADRTMLDVQLKSAT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2306 314 PANTHER SWI/SNF COMPLEX-RELATED 3 307 - -
Aed1g2306 314 SUPERFAMILY Homeodomain-like 50 106 IPR009057 -
Aed1g2306 314 MobiDBLite consensus disorder prediction 200 220 - -
Aed1g2306 314 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Aed1g2306 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Aed1g2306 314 Gene3D - 59 106 - -
Aed1g2306 314 SMART sant 55 103 IPR001005 -
Aed1g2306 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Aed1g2306 314 MobiDBLite consensus disorder prediction 200 221 - -
Aed1g2306 314 CDD SANT 58 101 IPR001005 -
Aed1g2306 314 Pfam Myb-like DNA-binding domain 56 101 IPR001005 -
Aed1g2306 314 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Aed1g2306 314 PANTHER PROTEIN REVEILLE 6 3 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2306 Aed-Chr1 19136360 19140468 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g2306 Myb_DNA-binding 3.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2306 - - gmx:100794389 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2306 1 19136360 19140468 Aed7g0637 7 4727056 4734390 ECH
Aed1g2306 1 19136360 19140468 Aed1g2306 1 19136360 19140468 ECH