Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2301 ATGGCGGCAGGACTCTCCACCTCCGCAAGCTTAAAGCCCTACAATCTCCTCCAACCCCGATTGACCCCTCTTTCTAAACCAACCCCATCATCACTCTTCTTCAATCCCTTAAGATGTTTCCATCACACTGCAATCCTTCGACCCCGATCCCGATCCAGAACAAGAATCAGTGACTTCGCCGTTTGCTTCCTCTCGGAGGATCCCAAACGGAACCGAGACCAAGAACAAGAAAAATCTGAGAAATTGGCCAGAAAGAAGTCCCAGAGGTTCACTTATCTAGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCCATGGCTGTCTTCGCCGTTTATTATAGATTCTCATGGCAAATGGAGGGTGGAGATGTTCCTTTGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCGCACCATCGAGCAAGAGAGGGACCATTCGAGCTTAACGATGTTTTTGCGATAACTAACGCTGTCCCTGCGATCGCTCTTCTCTCATACGGTTTTTTCAACAAGGGTCTGGTTCCTGGCCTCTGTTTTGGTGCAGGCCTTGGAATCACGGTGTTCGGGATGGCCTACATGTTTGTCCACGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTGCTGCTCACAAACTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGGCTGTTTTTGGGACCAAAGGAAGTTGAAGAAGTAGGAGGGGTAGAAGAGCTAGAGAAAGAAATAAGTAGGAGAATCAGATCCGGTTCATGA 882 0.4932 MAAGLSTSASLKPYNLLQPRLTPLSKPTPSSLFFNPLRCFHHTAILRPRSRSRTRISDFAVCFLSEDPKRNRDQEQEKSEKLARKKSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDVPLSEMLGTFSLSVGAAVAMEFWARWAHRALWHASLWHMHESHHRAREGPFELNDVFAITNAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHKLHHSDKFNGVPYGLFLGPKEVEEVGGVEELEKEISRRIRSGS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2301 293 Pfam Fatty acid hydroxylase 139 266 IPR006694 GO:0005506|GO:0008610|GO:0016491
Aed1g2301 293 PANTHER BETA-CAROTENE HYDROXYLASE 7 290 - -
Aed1g2301 293 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 7 290 IPR045019 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2301 Aed-Chr1 19114644 19116857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2301 1 209 Chloroplast and Mitochondria Gene Families AT4G25700 56.710 7.15e-82 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2301 K15746 - gmx:100802778 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2301 1 19114644 19116857 Aed7g0631 7 4694799 4698448 ECH
Aed1g2301 1 19114644 19116857 Aed1g2301 1 19114644 19116857 ECH
Aed7g0631 7 4694799 4698448 Aed1g2301 1 19114644 19116857 PCT