Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2284 ATGTGTTGTGACCGAACCGAACCACAATCCAACACCACATACTTTCACGCGCAGCGAGCGCTTGTATACACTTTCTTGTTAGAAACGTTTTTCGCCCTACTACAACAGCAGCCTGCAGGAACGACAGAGTTCTCCCTCTCTCTCTCTCTCTCTCACGCTATTTTCTCGCGTTTTTCTCGACGATTTTCCTTCCATCCAAACACTCCCAATCCCTTCGCAGCCGGTTGCGGTTTATCTTCGGATCGTCACAAGAGAATCTCTTCAGCTTCCAAGCGATCTCTCCCTCCTCCTTCCTCCCTGTGGAATCTTGCAAAGTTTATCATGCCAGTTGCAAAACTCCCGGCCTCTGGCACAACCGATTTCAAGAAAACAGATGATGGAAATGATTCTTTAGATACAATAATCAGACAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTGCCAGGGCTGGTGACAGCCCAGTACAGTGGATTCAATTACTTAATGCTTTAGATCAGCAAGCTTTTAAGCTGGTTTCCGGTGCTGCTGATTGTAAATCCAACATTCTGATAAAATCTTTCATGTGTTTGACAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAGAAGTGCAACAAATGTTCTCGAGAATTTTGCTCTCCCATTAGCTATAGAAGACACATACGCGTACAGCATCGGTTGAAAAAGCTTGATAAGGATTCTAAAAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCCGTAGAAGAGGCAAAGGAAGTTGCGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGCTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGGTAAGGAACATTGTGCGGTCTTGCTTATCTATTAGTTGTTTTTTTGCTGGGACATTCCCTCTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAGAACATTTTTGGTTGGATCAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAAGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCATAAGCTGCTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGGTTCTTGAGGAATGGCAAATATTTCAAGGAAAATCCAATAAGAAAAGCTGAAATTTTAGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACAACTTGAAGATGACACAAAAATTAAAGTGAACATAAGCAGCACAGGAGAGGATGTTTTGCCAGCTGAAGCATCTTCCGGTACTTGTGACTTTGAAGCACAGAATCCAGATATATTTGTGGATGATTCTCCTCCATCACATGTAACTTCTTGCTGCCTAGACACTAATGAAGTTATAGAAGGGGATACACTGTCTGGGTATGATTGTGATACTGATCAGTATATAGAGCGACAGACATCACGGGGACATAATCGCCGGCACATAATGGCTGCCAGATGGCAAGGGCTGCCAACATCACAATGGGCCAAAGCCAATGGTTCGCACACAGGTCAGAATTCTCAAATGTTAAAGCCTGGAGTCATTCAAAAACATGGAACCAACCGTGATCAAAGGGCAGTTCCTATAGTTAATGGTAGTAAGGTTTGGAGCCGCAAACCTAAACCAGAAACTAATGGGGTGGTTTTGAAAGCCAAACTGCAGAAAGATCCAGACAAGGGTAATAGTCATGAAGTTTTGATAGGATCTGTATCTGTTAGTCTGGCTTATTGCAGCCATTCAGAAGGGAATTTGGTAGCACCTCAGCGGGAATGCTTGGTAGAGAATCTAGCCAAGCAGAATACTGCTCAGGAGAAGCCAGTGAAACATGATTCCTCTCAGGGAAGCAACGGTCAGTTAATGGTTAAGCTCTGGAGGCCGGTTAGCCAGCATGGAACTAAAGATCCATTGCCACTTCAAAATGGTGGGACAGAAGCTGATATAATCAATGGAAAATATGACCAAAATTTGTCAGGTCAAAGTAGTTTGAGTTTGTGTAGTATAGATGGTAGTGATATTGGTTTTGGGGACAATTTTTCCCACACTGGGGCTAAAGTAGATTCAGAAAGCTTACGTCTATCCAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTTATCAAACCATGTGAAATTGGTTGTTACACCTGATACATCTAATGCGGACAGATGTAGCATTCTTGCAAATACAGAGAACCGATTGCCTGCAACCTCCGGAGTTGCTAAATCCAAACCCAAAACGAAGCCTGAGAAGGGAATGAAGATAAAGTACATTCCCAAACAAAAAGAAGCTACCTAG 2502 0.4289 MCCDRTEPQSNTTYFHAQRALVYTFLLETFFALLQQQPAGTTEFSLSLSLSHAIFSRFSRRFSFHPNTPNPFAAGCGLSSDRHKRISSASKRSLPPPSSLWNLAKFIMPVAKLPASGTTDFKKTDDGNDSLDTIIRQAIGKEPLLSFARAGDSPVQWIQLLNALDQQAFKLVSGAADCKSNILIKSFMCLTELPGWPLLSPVKVQLQKCNKCSREFCSPISYRRHIRVQHRLKKLDKDSKKNRDLLGAYWDKLSVEEAKEVASFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLVRNIVRSCLSISCFFAGTFPLNIVQSRPSSFPISSQELFSILDDSSERTFLVGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCHKLLVEEEEAAQKRFLRNGKYFKENPIRKAEILERKRQKKLRQKEHKAREQLEDDTKIKVNISSTGEDVLPAEASSGTCDFEAQNPDIFVDDSPPSHVTSCCLDTNEVIEGDTLSGYDCDTDQYIERQTSRGHNRRHIMAARWQGLPTSQWAKANGSHTGQNSQMLKPGVIQKHGTNRDQRAVPIVNGSKVWSRKPKPETNGVVLKAKLQKDPDKGNSHEVLIGSVSVSLAYCSHSEGNLVAPQRECLVENLAKQNTAQEKPVKHDSSQGSNGQLMVKLWRPVSQHGTKDPLPLQNGGTEADIINGKYDQNLSGQSSLSLCSIDGSDIGFGDNFSHTGAKVDSESLRLSSHAAKAFLAQRWKEAILSNHVKLVVTPDTSNADRCSILANTENRLPATSGVAKSKPKTKPEKGMKIKYIPKQKEAT 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2284 833 MobiDBLite consensus disorder prediction 812 833 - -
Aed1g2284 833 MobiDBLite consensus disorder prediction 804 833 - -
Aed1g2284 833 Coils Coil 438 463 - -
Aed1g2284 833 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
Aed1g2284 833 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 108 304 - -
Aed1g2284 833 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 315 832 - -
Aed1g2284 833 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 235 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2284 Aed-Chr1 18955046 18963544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2284 126 830 C2H2 Transcription Factor Family AT4G25610 41.341 2.10e-137 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2284 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2284 - - gmx:100799153 1181.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2284 1 18955046 18963544 Aed1g2284 1 18955046 18963544 ECH
Aed7g0598 7 4413277 4433451 Aed1g2284 1 18955046 18963544 PCT