Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2283 ATGGGTAGCATCGTGGAAGACGCCGACACTGACACAGTGCATGTTGCGGTCGGAAAGAACGCCGAGAAGACGCAGCAACTGTTGCATTGGACTGTTAAGAAATTCTCTGGCAAACAAATTTGCCTTCTTCATATTCACCAGCATCCTCACTCTCTCAACTCCTTCAACAGAAATCTCTCTGGGTATGAACCAAAAGACCATGCAGTCAAGGGATTCCAGGAGCATGGAAATCAAACAGTGCACGAACTTCTAGACCAATACATTTTCACTCTGGTCCCAGCAGGGGTACGGGCCTATAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCGCAAAAGCTATTTCTGAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGATGGATATAACTTGGGGGTATATAGTAAGCATACCTCTGACACAGAGTCTGGCCTTGCATTGTTGGTGCTCAATACAAATACAGATGCCAAGCAATCAGAAAAGATCAAATCAGAATCAATTCCAGATGATGCAGTGCAATATTTCGATTCTGATTATACGAAAGAGATCAAAAGTGTCAGTTCCCACCGTTTCTTAAATTCAAGATGGTCCTTTAATAATTCCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGACAAAACATTTGAAAGCCGGTGCGCTAAGGAGATACGAAGAAGAAAAGAAGTTGAAGAACAATGGGCAAGGGAAAAGCAAGAAGTACAGAAAATGAAGAATCAACGAGATGAAATACTTGAAGAATTGCAAATGGTCCAAGACCAAAATTCAGCACTAATGAACCAAATTTCTGAGTCCCAGTGTATGGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGACTTAGGATAGAGCATGCAAATGCAGTTAGGGAAGTCAAAGTGCTTAGAAAATTTGGGGAAGCAGATCCTTCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCATTGAGGCGACTAATGATTTTGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTCAGAGCCTATTAGAGTTCCAATATCAGTCTAGGTCACTTGTGTATGAGTACGTAAACAATGGCAGCCTTGAAAGCAATCTTGCTCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCCAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACACTATGTAATAACCCAAACGAACGTTTGGCATATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCAGAATCGGATGTATACTCTTTCGGAGTCATATTGTTACAACTTCTAACTGGAAGACCCCTTTTCGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACATTTCAGCTGGTGAATGGCCACTTTTTCAAACAGAACAACTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGAATGTTCTTGAACCATTCAAAGCTACTTGCATTGACACGCCACCATATTTGATTTATAAGAAGCTTCATCGTGTTCCTTCCCATTTTGTCTGTCCCATTGTCCAGGAAGTAATGGTAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAACTAGATCACACAGATTTGGTACCTAACTATGCTCTGCATAATGCAATTCAGGAGTGGCAGCAACATTGA 2049 0.4178 MGSIVEDADTDTVHVAVGKNAEKTQQLLHWTVKKFSGKQICLLHIHQHPHSLNSFNRNLSGYEPKDHAVKGFQEHGNQTVHELLDQYIFTLVPAGVRAYKLLIEMDDIEKGIAKAISEHNIRWLVMGAAADGYNLGVYSKHTSDTESGLALLVLNTNTDAKQSEKIKSESIPDDAVQYFDSDYTKEIKSVSSHRFLNSRWSFNNSMDRSKLADLMFHEDKTFESRCAKEIRRRKEVEEQWAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCMETELEEKIISAVDLLISFREKRDRLRIEHANAVREVKVLRKFGEADPSFSYQVEFPAFSFVEIIEATNDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGRQSLLEFQYQSRSLVYEYVNNGSLESNLARKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADTSTLCNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLFGLVRDMKCALEKENLKAVLDISAGEWPLFQTEQLAYLALRCCEKTWLNRPDLVSEIWNVLEPFKATCIDTPPYLIYKKLHRVPSHFVCPIVQEVMVDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAIQEWQQH 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2283 682 Gene3D Transferase(Phosphotransferase) domain 1 404 598 - -
Aed1g2283 682 ProSiteProfiles U-box domain profile. 612 682 IPR003613 GO:0004842|GO:0016567
Aed1g2283 682 CDD RING-Ubox_WDSUB1_like 617 658 - -
Aed1g2283 682 Coils Coil 233 274 - -
Aed1g2283 682 ProSiteProfiles Protein kinase domain profile. 351 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2283 682 Pfam U-box domain 613 681 IPR003613 GO:0004842|GO:0016567
Aed1g2283 682 SUPERFAMILY RING/U-box 611 681 - -
Aed1g2283 682 Gene3D HUPs 4 132 IPR014729 -
Aed1g2283 682 SUPERFAMILY Protein kinase-like (PK-like) 327 595 IPR011009 -
Aed1g2283 682 CDD STK_N 12 132 - -
Aed1g2283 682 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 8 156 - -
Aed1g2283 682 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 155 681 - -
Aed1g2283 682 ProSitePatterns Protein kinases ATP-binding region signature. 357 378 IPR017441 GO:0005524
Aed1g2283 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 682 IPR013083 -
Aed1g2283 682 Pfam Protein tyrosine and serine/threonine kinase 394 583 IPR001245 GO:0004672|GO:0006468
Aed1g2283 682 Gene3D Phosphorylase Kinase; domain 1 331 403 - -
Aed1g2283 682 SMART Ubox_2 616 679 IPR003613 GO:0004842|GO:0016567
Aed1g2283 682 PANTHER OS02G0152300 PROTEIN 8 156 - -
Aed1g2283 682 PANTHER OS02G0152300 PROTEIN 155 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2283 Aed-Chr1 18947496 18954069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2283 220 682 U-box Gene Family AT3G49060 49.795 2.29e-149 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed1g2283 PK_Tyr_Ser-Thr 1.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2283 - - gmx:100799675 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2283 1 18947496 18954069 Aed1g2283 1 18947496 18954069 ECH