Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2280 ATGAAACCTCGGCGTTGCGAAAACGCGAAAGAGGAGGGTGTACTGGTGGAATGCGCAGAGCTTGTGTTACCTTATCTAACGCCGTCAGAACTCGCCAACGTCTCTCTGACCTGCAAATCCCTCCTCGAACACTCCCGCGCCGTCACTCTCCGACGCGCCTCCGACGCTTCCAGAACCTTCGAGACCCTCCCGATCCCATTTCTCAACACCGTCGACGCCCACCCCTACTCGCACTTCTTCTACACGCGCTCCCTCCTCCTCCCCTCCCCAATAACCCTCCCTCGCCACCCCTGGGGCGCCTCTTCCGTAATTCCCCACTCCGCGCCGACTCACCATCGCGCCGAATCGGTGGGCTTCGTCGACGCATCGGGCTGCGACTGCGAGGTGTGTGCGGGCCCCGCGTGTCCTTGCGCGGGCCTGGATGCCCTGGATGACGTGGGCCGAGAGTGCGGACCGGGCTGCCGCTGCGGGCCCGAGTGCGGGAACCGGTTGACCAGAAATGGGCTTGCGGTAAAGGTGAAGATTGTGAGAGATCAAAGGAAAGGATGGAGCTTGAAAGCAGACCAGTTCATTGTGAAAGGACAGTTTCTATTTGAATACGCAGGTGAACTTTTGACAACCAAGGAGGCGCAAATGAGACATCAACGTTACGATAAATTGGTTTCGCAGTCTCGTGGTGGTTTCTCCTCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCTTCAGGGAAGGCGTGTCTGAGATTGAACATCGATGCGACGAGGATAGGGAATGTTGCGCGGTTTGTAAACCATTCGTGTGACGGTGGTAATTTAAGCACGAAGCTTGTTAGAAGTTCAGGAGCTCTGTTCCCACGCCTCTGCTTCTATGCTTCGAGGGATATCGAGATAGATGAAGAGCTTGCTTTTAGCTATGGAGATATCAGGAAAAGGCCGAATGGGTTGCCATGCTTCTGCAATACCACTTCTTGCTTTGGAACATTGCCCTCTGAAGACACTTGA 999 0.5526 MKPRRCENAKEEGVLVECAELVLPYLTPSELANVSLTCKSLLEHSRAVTLRRASDASRTFETLPIPFLNTVDAHPYSHFFYTRSLLLPSPITLPRHPWGASSVIPHSAPTHHRAESVGFVDASGCDCEVCAGPACPCAGLDALDDVGRECGPGCRCGPECGNRLTRNGLAVKVKIVRDQRKGWSLKADQFIVKGQFLFEYAGELLTTKEAQMRHQRYDKLVSQSRGGFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFYASRDIEIDEELAFSYGDIRKRPNGLPCFCNTTSCFGTLPSEDT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2280 332 Pfam SET domain 182 305 IPR001214 GO:0005515
Aed1g2280 332 Gene3D SET domain 35 311 IPR046341 -
Aed1g2280 332 SMART set_7 171 311 IPR001214 GO:0005515
Aed1g2280 332 ProSiteProfiles SET domain profile. 171 305 IPR001214 GO:0005515
Aed1g2280 332 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 8 320 - -
Aed1g2280 332 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 8 320 - -
Aed1g2280 332 SUPERFAMILY SET domain 63 325 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2280 Aed-Chr1 18938014 18939105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2280 149 327 C2H2 Transcription Factor Family AT2G23740 34.211 1.31e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed1g2280 SET 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2280 K11433 - gmx:100786871 556.599