Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2276 ATGTCAGAATCTGAGGAAGAAAATCCAGACTTTGTTCCCAGGTCAAAGCCATTAGAGGAAGTTGGCTGCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATAACATGGTCTTTGGCTCCAACCCCATGTCACCTTTTTTGTTCTCAACTTCCTCTGAACAACCTTACTCTCCTCTTTGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCTGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGACGACAGCAAAAAAGTTTTGCCACCATTTGTGCCTATGCAACCAGTGGAAAATGTGGATGGTTACTGTGTAATCAAGGAAAGGATGACACAAGCGCTTCGTCACTTCAAAGAGTTGACTGAACTGAATGTTCTAGCTCAGGTTTGGGCACCAGTGCGGAATGGTAACCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCTGTGGATGGGGAGAATGATGGATCCTTGGGACTCCCTGGTAGGGTTTTTCAGCAGAAATTGCCAGAATGGACTCCCAATGTTCTCTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGCGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAATGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGATTCATCAATCACCTGCTGTCAGTTTCCTTGCAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCAACCATTCACTCAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTGGCTCAGACATGGATTCCTTGTAAGCATCGAAGTGTTTTGGCCCAAGGTGGGGGTGTGAGGAAAACTTGTTCAAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATAGATGCTCCTTTATGGGGTTTTCGCGAGGCCTGTCTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACGGCATGTGCTTCAGTTCAAACATTACTCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTACAATATGTTTACGAAGCTCCCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAGTCACAGAATTTCATGAACAAAAGACTTTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGACGGTTCAATTGAAATTATTGAAGCAACAGTTGAAAGAGTTCATACCAGGCTTGAATCTATTCCAATTGCCCCATCTATTAAATCACCACCTAGACCTGATACCTCACCAAACATGGGGGAGGAAGGAGGGCCACTGGATCAATCAGAACAACAAATATTGATGTACTGTAATGGCACCAATGATGGAGGGAGTCTTGGTAAAAACGCAGCCAGACACATTGATCATATGCCCTCCTTAGAGACTAAAAACATAAAGAAACCCCTAGAGAGGAAACGGGGAAAAACTGAGAAATCAATTAGCCTTGAGGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGCAGGCAGCATGGCATATCGCGTTGGCCATCACGAAAGATCAACAAGGTTAACCGTTCACTGTCAAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTGAGCAAAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAACAAGTACAGCCAACCAGCCTCATTAAGCATTAAGTCATCAGAGCTTCATATGAAAGAGGATGAATTGAATGCCTCCAAAGCATTAGAAACAAACAGATTGCTAGGAGGCAGGACACCACATCGTGAGAAAGTAATTAACGATAAAGGTGGTTATACTCAAGAGGTTGGGAAAGAACCGAAACGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGGCATGACAGTCCCCCTATTGAAAGTTCACCTGTAAAGGATATATTCATTGCTTCCAACAATGATCAATGTGCTGGGCTAAAGAGATCACCAGAGTCAACACTGCAGCCAACTACAAATATGCCAAACCAGACAACTACTGACTACCCTATGCCCAACTTTTTGGCCGCAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTGAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATATGATTCCAGAAGCTTGTGGGACTAATCCTCCAGGTCCAGATTTGTCTCCTAAGCTAAGCATGGGTACTCCTAATAAGGCAGTGACACCTTTTGCAGCTACGAAAGAAATGAAGACGGTGACAATCAAGGCAACATACAGAGAAGACATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTTGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATTAAGTACCTGGACGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATTACTTCAAATCTTGGAAGCTCATGTGAGAGCTCAGGGGAGTGA 2973 0.4326 MSESEEENPDFVPRSKPLEEVGCTMDFDLDLETSWPLDNMVFGSNPMSPFLFSTSSEQPYSPLWAFSDGEDPKLPASAFSDCHKIFPCDSNSIAEKPVENDDSKKVLPPFVPMQPVENVDGYCVIKERMTQALRHFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICKALEIHQSPAVSFLADSKFEEFGNFGPTIHSGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVRKTCSSFDGSCMGKVCMSTTDIAFYIIDAPLWGFREACLEHHLQQGQGVAGRAFLSHGMCFSSNITQFCKTDYPLVHYALMFGLTSCFTICLRSSHTGNDDYVLEFFLPPRVTEFHEQKTLLGSILSTMKQHFQSLKIASGVELEDGSIEIIEATVERVHTRLESIPIAPSIKSPPRPDTSPNMGEEGGPLDQSEQQILMYCNGTNDGGSLGKNAARHIDHMPSLETKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPLPIAVGSFPEPSTPNKYSQPASLSIKSSELHMKEDELNASKALETNRLLGGRTPHREKVINDKGGYTQEVGKEPKRTRTGSGSSEDSTNPTSHGSWHDSPPIESSPVKDIFIASNNDQCAGLKRSPESTLQPTTNMPNQTTTDYPMPNFLAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDMIPEACGTNPPGPDLSPKLSMGTPNKAVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2276 990 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 989 - -
Aed1g2276 990 MobiDBLite consensus disorder prediction 751 769 - -
Aed1g2276 990 Pfam RWP-RK domain 592 640 IPR003035 -
Aed1g2276 990 ProSiteProfiles PB1 domain profile. 895 977 IPR000270 GO:0005515
Aed1g2276 990 SUPERFAMILY CAD & PB1 domains 891 980 - -
Aed1g2276 990 SMART PB1_new 895 977 IPR000270 GO:0005515
Aed1g2276 990 PANTHER PROTEIN NLP8 3 989 IPR045012 GO:0003700
Aed1g2276 990 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Aed1g2276 990 MobiDBLite consensus disorder prediction 720 750 - -
Aed1g2276 990 CDD PB1_NLP 896 976 IPR034891 -
Aed1g2276 990 Pfam PB1 domain 895 976 IPR000270 GO:0005515
Aed1g2276 990 MobiDBLite consensus disorder prediction 515 538 - -
Aed1g2276 990 MobiDBLite consensus disorder prediction 713 776 - -
Aed1g2276 990 Gene3D - 892 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2276 Aed-Chr1 18924079 18929086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2276 259 990 NLP Transcription Factor Family AT4G24020 50.740 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aed1g2276 PB1 2.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2276 - - gmx:100785821 1749.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0591 7 4357536 4362438 Aed1g2276 1 18924079 18929086 PCT