Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2267 ATGCAAGCTCCAACCACACTCACCGGATTGCTTCATCATGTCGCCGGAATATTCCCCTCCCGCCGCGCCGTCTCCGTCTCCGGCAAGTTTGACCTCACGCACTCCCGCCTCCACCACCTCGTCGAACGCACCGCCTCGAGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCGCCAACACCGTCGAGTTTATCATAACGTTCTTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCATTGAACGCGGCTTACACAGCGGAGGAATTCGAGTTTTATTTGTCCGACTCAGATTCAAAGCTGTTACTAACGTCAAAAGAAGGAAACGCGCCAGCTCAAGCCGCGGCTTCCAAGCTGAACATTCCGCACGCAACAGCGTGGCTCGCGGAAGGCGAAGCCGAGGAGCTGAGTCTCTCCCTGAGTTCCACCGAGTCAGTTTCCGACTCAGTTTCGGAACTCTCCAACGACGCATCCGACGTGGCACTGTTCCTTCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCATTGACGCAACACAATTTGGCCTCATCGGTGGAGAACATCAAGTCCGTGTACAGACTCACTGAGTCAGACTCGACCGTGATCGTTCTCCCGTTGTTCCACGTGCACGGCCTGCTCGCGGCGCTGCTTAGTTCGCTCGCAGCCGGAGCCGCTGTGACGCTCCCGGAGGCGGGGAGGTTCTCCGCCTCCACGTTTTGGAGCGACATGGTGAGGTACAACGCCACGTGGTACACCGCGGTGCCTACGGTGCACCAAATCGTACTGGAGCGTCACTTAAAGAACGCGGAACCGGTTTACCCGAAGCTCCGGTTTATCCGGAGCTGTAGCGCGTCGCTTGCACCGGTTATACTGGACCGGCTGGAGGAGGCTTTCGGGGCCCCGGTTTTGGAGGCGTATGCTATGACGGAAGCCTCGCATTTGATGTCGTCGAATCCGTTACCAGAAGATGGGCCTCACCGGGCCGGGTCTGTTGGAAAGCCCGTGGGCCAAGAAATGGTAATATTAAATGAGAAAGGTGAGATTCAAAAAGCTGATGTGAATGGTGAGGTTTGTATTAGAGGACCTAACGTGACCCTAGGGTATAAAAATAACCCTGATGCGAATAATTCTGCGTACGAATTCGGGTGGTTCCACACCGGTGATATCGGGTTTTTCGATTCGGACGGGTATTTGCACCTCGTGGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCTGTGCTTCTATCTCATACAGACATTGCTCAGGCAGTTGCATTCGGAGTGCCAGATGACAAATATGGCGAAGAGATAAATTGTGCAATCATCCGAAAAGAAGGATCAAACATTGATGAGGCAGAGGTGCTTAGATTTAGCAAGAAGAACCTTGCAGCCTTCAAAGTCCCTAAAAAGGTCTTCTTCACTGATTCTTTGCCCAAGACTGCCACTGGCAAGATTCTAAGGCGTCTGGTAGCAGAACACTTCATTTCTCAAACTTAA 1548 0.5433 MQAPTTLTGLLHHVAGIFPSRRAVSVSGKFDLTHSRLHHLVERTASSLLSAGIKPGDVVALTFANTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQAAASKLNIPHATAWLAEGEAEELSLSLSSTESVSDSVSELSNDASDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLLAALLSSLAAGAAVTLPEAGRFSASTFWSDMVRYNATWYTAVPTVHQIVLERHLKNAEPVYPKLRFIRSCSASLAPVILDRLEEAFGAPVLEAYAMTEASHLMSSNPLPEDGPHRAGSVGKPVGQEMVILNEKGEIQKADVNGEVCIRGPNVTLGYKNNPDANNSAYEFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHTDIAQAVAFGVPDDKYGEEINCAIIRKEGSNIDEAEVLRFSKKNLAAFKVPKKVFFTDSLPKTATGKILRRLVAEHFISQT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2267 515 PANTHER OXALATE--COA LIGASE-LIKE 1 514 - -
Aed1g2267 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Aed1g2267 515 PANTHER ACYL-COA SYNTHETASE 1 514 - -
Aed1g2267 515 SUPERFAMILY Acetyl-CoA synthetase-like 5 513 - -
Aed1g2267 515 Gene3D - 1 410 IPR042099 -
Aed1g2267 515 Pfam AMP-binding enzyme 16 417 IPR000873 -
Aed1g2267 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
Aed1g2267 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
Aed1g2267 515 Gene3D - 411 513 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2267 Aed-Chr1 18808929 18812302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2267 5 514 Monolignol Biosynthesis Gene Families AT4G05160 30.930 2.16e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2267 K22133 - gmx:100783685 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2267 1 18808929 18812302 Aed7g0586 7 4285457 4290410 ECH
Aed1g2267 1 18808929 18812302 Aed1g2267 1 18808929 18812302 ECH
Aed7g0586 7 4285457 4290410 Aed1g2267 1 18808929 18812302 PCT