Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2252 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTCAGAAGGGGAGCTTGGACACCTGAAGAAGACCAAGCTTTGGTTCAATACATTGAAAAGCATGGCCATGGAAGTTGGCGTTCACTCCCCAAACATGCAGGTCTCCTACGATGTGGAAAAAGTTGTCGACTTCGGTGGATAAATTATCTTCGCCCTGGCATTAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATTATTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTTCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTACTGGAACACCCACCTAAAGAAGCGCGTCATTCGGTCGTGTCAATCCCTAAGAGCAAAACAGCCATGTTTGATTCCTGATCAAACAATAGTCAAGTCCGAATCTCCTTCAACGCGGCACATGGTACAGTGGGAAAGTGTGAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCAATCCTCAATTCATTTCCAACGAGTAAAACATGCCCTGATCGCTTTCTTCAACTTTGGCATTCAGAGGTTGGAAAGTCATTTCGCATGATCAAGGGAAAGGAAGTAGTGTGTCAAAGTCCTGCTGTGTCACAACCTTCATCCTCATCAAAATTGGAATCTTTTTCTGATGTATCATTGCAGGTGAAAAACACTGGAACTAATAGTTGCAATCCGAAGCTTGAGGATGTGAACATGGTTCATGAGCTAACAAGTAGCTACAAACCAAAGCTTGATGATGACACAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTGAAGCACCTACTACATATGCCTGATAGTGATATAGGATTCTTGGGACAGAATGATCATTTCCAAAATCTCCTTGATGGTACATGTGAGTTATGA 912 0.4298 MGKAPCCEKHGVRRGAWTPEEDQALVQYIEKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIIQLHGMLGNRWASIASQLPGRTDNEIKNYWNTHLKKRVIRSCQSLRAKQPCLIPDQTIVKSESPSTRHMVQWESVRVEAEARLSMESSILNSFPTSKTCPDRFLQLWHSEVGKSFRMIKGKEVVCQSPAVSQPSSSSKLESFSDVSLQVKNTGTNSCNPKLEDVNMVHELTSSYKPKLDDDTGNYEFLDTSDSALKHLLHMPDSDIGFLGQNDHFQNLLDGTCEL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2252 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 291 - -
Aed1g2252 303 CDD SANT 69 112 IPR001005 -
Aed1g2252 303 SMART sant 13 63 IPR001005 -
Aed1g2252 303 SMART sant 66 114 IPR001005 -
Aed1g2252 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed1g2252 303 CDD SANT 16 61 IPR001005 -
Aed1g2252 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed1g2252 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed1g2252 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed1g2252 303 Gene3D - 69 116 - -
Aed1g2252 303 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 291 - -
Aed1g2252 303 Gene3D - 14 66 - -
Aed1g2252 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed1g2252 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed1g2252 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2252 Aed-Chr1 18724912 18726620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2252 1 290 MYB Transcription Factor Family AT3G61250 51.333 3.52e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g2252 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2252 K09422 - gmx:100782075 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2252 1 18724912 18726620 Aed1g2252 1 18724912 18726620 ECH