Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2250 ATGGGGTACCAGCCATTGGAAAAGGAAAAACCAAAACATAAGAAGGGGTTATGGTCACCTGAAGAAGACAACAAGCTCAGAAACTACATCATTAAACATGGTCATGGCTGTTGGAGTTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGCTGTAGATTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGAAAGTTCAGTAAACAGGAAGAGGAGACAATCCTCACCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGGACAGACAATGAGATTAAAAACTACTGGCATTCTTATTTGAAAAAGAGAGTGGCCAAAGCTAAGGAAATGGAATCTCACAACCAAATTAAGTATGCTAGCTCAAGCTCAGATACACTGGACTCTTCAAATTCTCTCCAAAAATTTGCAACACAAGGCCCACAGAATCATAACTTCACCAAAGAGGCTTGTCAAAGCTCCTTACCAAAACTTTTATTTGCTGAGTGGCTTTCACTGGATCATGTAAACTCTGCAAATTCAGTTGACTCTTTGGGTTTGAGGAGTGGATTTGATCAAAATTCAACTTTTCAGGAAGCTGCAATTCATGGTATGTCAGAGGTACCCTTTGGTGGAGAGTATAATAGATGTGTAAGTAACATTTCAACCCCTGAGATGTTCAATTCACAGCTGAAGTATGCAAATAATCAAATGGTGGAAAATGGTTTCATTCATTGTATGCTTGGGGTTGACTTAAGTAGCAATTTCAGCATGAGCAATGATGCAATAATGTACATATGA 816 0.3995 MGYQPLEKEKPKHKKGLWSPEEDNKLRNYIIKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKAKEMESHNQIKYASSSSDTLDSSNSLQKFATQGPQNHNFTKEACQSSLPKLLFAEWLSLDHVNSANSVDSLGLRSGFDQNSTFQEAAIHGMSEVPFGGEYNRCVSNISTPEMFNSQLKYANNQMVENGFIHCMLGVDLSSNFSMSNDAIMYI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2250 271 SMART sant 67 115 IPR001005 -
Aed1g2250 271 SMART sant 14 64 IPR001005 -
Aed1g2250 271 CDD SANT 18 62 IPR001005 -
Aed1g2250 271 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aed1g2250 271 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aed1g2250 271 Gene3D - 15 67 - -
Aed1g2250 271 PANTHER MYB DOMAIN PROTEIN 55 154 263 - -
Aed1g2250 271 Gene3D - 69 140 - -
Aed1g2250 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aed1g2250 271 PANTHER MYB DOMAIN PROTEIN 55 1 154 - -
Aed1g2250 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed1g2250 271 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed1g2250 271 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aed1g2250 271 CDD SANT 70 113 IPR001005 -
Aed1g2250 271 PANTHER MYB TRANSCRIPTION FACTOR 154 263 - -
Aed1g2250 271 PANTHER MYB TRANSCRIPTION FACTOR 1 154 - -
Aed1g2250 271 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2250 Aed-Chr1 18718690 18721019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2250 7 177 MYB Transcription Factor Family AT5G52260 56.915 2.27e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g2250 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2250 K09422 - gmx:778167 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2250 1 18718690 18721019 Aed1g2250 1 18718690 18721019 ECH