Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2235 ATGCAAAATTCATCTTCCTTCTCCTACTCAACCCAAAGGAAAATGGAGGGACCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGACGATGAGTACGAAAGCCGTTCTGGAAGCGACAACTTGGAAGGCGCATCTGGTGATGAACAAGATGGCGGTGATGATCTGCCACAGAGGAAGAAGAGATACCACAGACACACTCCTCACCAAATTCAAGAGCTTGAGGGTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTAGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAATTTGATGAAGGATGCGATGTCAAATCCAGTTTGTAACAACTGTGGTGGCCCAGCAATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCTCGGCTTAAGGATGAACTAAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCATTGACCGGTCCCATGGCTCTCCCAGGTTCAAATTCTGGTCTAGAACTCGGTATTGGAAGGAATGGGATTGGTGGTTCAAACACTCTCGGCACTCCCTTGCCAATGGGGCTTGATTTGGGAGATGGAGTGTTGGGTACTCAACCTGCAATGCCTGGGATTAGACAACCATTGGGGTTGATGGGAAATGAAATTCAGCATGAGAGATCTATGCTTATGGAGCTTGCATTGGTTGCTATGGAGGAATTGCTGAAGATGACTCAGGCAGAGAGCCCTCTCTGGATTAAGAGTATGGATGGTGAGAAGGAAATGTTTAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGCTATGTAACTGAAGCTACAAGAGAAACTGGGATTGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCTATGGTTGCTAGAGCTGTCAACCTGGATGTTATATCTAGTGGCATAAGTGGAACAAGAAATGGTGCTCTACAATTGATGCATGCTGAGGTTCAATTGCTTGCACCACTAGTCCCGGTTCGTCAAGTGAGATTCATCCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGAGATTGGTCATGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTCCAGGATATGCCTAATGGTTACTCCAAGGTAACATTGAGCCAAGCTGGTAGGAGGAGCATGTTGAAATTGGCGCAACGCATGACTAGCAACTTCTGCTCTGGGGTTTGCGTCTCGTCGGCTCGCAAGTGGGACAGCCTTCACGTAGGGACTCTAGGTGATGACATGAAAGTCATGACAAGGAAAAATGTGGATGACCCCGGTGAGCCTCCTGGGATCGTCCTTAGTGCCGCCACTTCTGTCTGGATCCCACTCTCACGCCAAAGGATCTTCGACTTTCTGCGTGATGAACGCCTCAGAAGCCAGTGGGACATCCTCTCCAACGGTGGACCAATGCAGGAGATGGAGACATGGATGGACGCGTCATGCTCAGTGGTGGTATATGCACCCGTTGACGTGCAATCGCTGAACGTGGTGATGAGTGGTGGAGATTCTGCATACGTGGCACTCTTGCCTTCAGGCTTTGCAATTCTCCCCGATGGCCACAACGGCTGCAATGGTACACTGCAGAAGGGCGGTGGCGACGATGATGGCGGGGGGAGCCTTCTGACAGTTGGGTTCCAAATTCTGGTGAATAGTCTCCCAACAGCGAAGCTCACAGTGGAGTCCGTGGACACTGTGAATAACCTCATCTCGTGCACCATTCAGAAGATCAAAGCTGCTCTCAGAGTTGCGTGA 2022 0.4847 MQNSSSFSYSTQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNLEGASGDEQDGGDDLPQRKKRYHRHTPHQIQELEGFFKECPHPDEKQRLDLSKRLSLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENNLMKDAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTGPMALPGSNSGLELGIGRNGIGGSNTLGTPLPMGLDLGDGVLGTQPAMPGIRQPLGLMGNEIQHERSMLMELALVAMEELLKMTQAESPLWIKSMDGEKEMFNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMVARAVNLDVISSGISGTRNGALQLMHAEVQLLAPLVPVRQVRFIRFCKQHAEGVWAVVDVSIEIGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTLSQAGRRSMLKLAQRMTSNFCSGVCVSSARKWDSLHVGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWIPLSRQRIFDFLRDERLRSQWDILSNGGPMQEMETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHNGCNGTLQKGGGDDDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKAALRVA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2235 673 CDD homeodomain 67 125 IPR001356 GO:0003677
Aed1g2235 673 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 460 - -
Aed1g2235 673 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 564 671 - -
Aed1g2235 673 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Aed1g2235 673 Pfam START domain 278 460 IPR002913 GO:0008289
Aed1g2235 673 MobiDBLite consensus disorder prediction 1 15 - -
Aed1g2235 673 ProSiteProfiles START domain profile. 268 460 IPR002913 GO:0008289
Aed1g2235 673 CDD START_ArGLABRA2_like 272 460 - -
Aed1g2235 673 MobiDBLite consensus disorder prediction 1 75 - -
Aed1g2235 673 SUPERFAMILY Homeodomain-like 55 125 IPR009057 -
Aed1g2235 673 Coils Coil 119 154 - -
Aed1g2235 673 MobiDBLite consensus disorder prediction 32 46 - -
Aed1g2235 673 SUPERFAMILY Bet v1-like 270 461 - -
Aed1g2235 673 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 460 IPR042160 -
Aed1g2235 673 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Aed1g2235 673 SMART HOX_1 66 129 IPR001356 GO:0003677
Aed1g2235 673 SUPERFAMILY Bet v1-like 472 667 - -
Aed1g2235 673 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 460 563 IPR042160 -
Aed1g2235 673 SMART START_1 277 499 IPR002913 GO:0008289
Aed1g2235 673 Gene3D - 56 141 - -
Aed1g2235 673 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 564 671 IPR042160 -
Aed1g2235 673 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Aed1g2235 673 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 460 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2235 Aed-Chr1 18614904 18619999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2235 20 670 Homeobox Transcription Factor Family AT3G61150 52.520 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed1g2235 START 1.3e-29 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2235 K09338 - gmx:100785102 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2235 1 18614904 18619999 Aed7g0543 7 3997530 4001353 ECH
Aed6g0151 6 1343787 1349771 Aed1g2235 1 18614904 18619999 ECH
Aed1g2235 1 18614904 18619999 Aed1g2235 1 18614904 18619999 ECH