Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2224 ATGGAGTCCGCGACGGTGATGAAGTCAAGCTTCCCAATTTTCAGGACAAACCCATTTTTCCTCTGGACAAGACCTCTGAGTCGACCCATTAAGGTTTCCGTGAAACCCCCGCCGGCAGATTTCGATTACAGGGGCGAGATCTGGAAGGAGTCGAGAGCCGCCATAGGCGAATCTCACCCTGAGTTGCTGGACTTGGCTGAGAATGGGAGTTTGGTTTTGGTCCAGAAGAAGAGGTTTGGGCCTGTCCCTTCTTGGAGAACCGAATTCGTAGAACCTGAATCCATTTGGTTGATTGGAACCAGCCATGTTTCTAAGGATTCCGCTATCGAGGTAGAACGCGTGGTGCGTGCTCTCAGGCCAGATAATGTCGTTGTTGAACTCTGCAGAAGCAGAGCTGGGATCATGTATGCTACTGCCAATGATGAGCTTGGCAAACAACTGCGTTCTAATATGTTTTCCTTGAGTGGCACTGGCTTTTTTGGAGCTATTGCTCGTAGCATAAACCTAGGTGGTCAAACTGCTTTAGCATTACGATTACTTTTGGCTACTTTTTCATCAAAGATCTCTTCAGATATTAATCGCCCTTTTGGTGATGAGTTTCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGTGCACAAATAGTTTTAGGAGATCGACCAATTGAAATAACGCTTCAAAGAGCATGGGAGGCTATGAATTGGACTCAGAAACTAAGCTTAGTGTCATCAATTATTAGCGGGATAGCATCTTCATCTAACAGTTCTATAAATAAGCTCAAGTATCTTGCATGGTCATTGAAGAGGAGTAAAGCTGTGAATAACAGTAAAAAGGTTGTGGGTGTGATTGGAAAAGGCCATATGAACGGTGTAATATATGCATTGTTGTCTGATACGGGAAATTTGAGGTTTCGAGATCTTGTAGGGAAACATTCATCTTCGTATGATGGAAATGGAGATTTTGCTGAGATCCGCATCCTTGTCTTGGTCAACACCAAATATCTGTTACTCTCTGCTCTGTTCTGCTTAGGGTTTCAACCCAACACTGATCGTTCTAATGCAAGAGAAAACCAAGATCTGAGATCTGGAACCCAATTTCCAGGTTTTGATCCGCTGTTATCCTCTGTTTTTTGTGATTCTCGACAACCAATCAGTCAATCAGTTTTGAAGCGCTTTCTGTTCTGCGAAGTTAGCTTCTTGCTCTTTGGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCTCGGCAGTCGGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGACGAGAGAGATGCTGAGGCTGCGATTCGTGCTCTTGATCGAGTAGAATTTGGTCGAAAGGGACGCAGACTCCGTGTGGAATGGACAAAGCATGAGCGTGGCGTTAGAAGGCCTGCTGGATCAAGAAGATCTTCAGCAAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGATTTGGAGAGGCACTTTGAACCATATGGAAAGATTGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTGATTTCGGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGATGGAAGGCGATCACCTAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGATCCAGTCCATATCAGAGAGAGCGGGGCAGCCCTGACTATGGCCGTGGCCGTGACCGTGACCGTAGCCGTAGCAGAAGCCCCCCTCGGAGAGAGAGAGCCAGCCCTGCTTATGGGCGTAGAAGCCCTAGTCCATATAAAAGAGAAAGGGAGGGTTCTGAACCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGGATTTCTCCTTCTCAGAGTCCTGAAGGAAGAGGGAGAAAAAGCCCCCGAAATGACCGCAGCGGTTCTAGCCATAGTCCTCGTGATACTGTGAAGACAAGCCCTGAAAATGGACATGGCTCCGGAAGTCCTGAAGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAGGGAGCCCAAATACCATGCCTGATCCCAGGGACAGTCCCAATTATGGCGGCCCTGAAAGTCCCATGCATGAAAGATACCGCAGGCCTGCGAACATCAATTTATTTCTTTAG 2325 0.4611 MESATVMKSSFPIFRTNPFFLWTRPLSRPIKVSVKPPPADFDYRGEIWKESRAAIGESHPELLDLAENGSLVLVQKKRFGPVPSWRTEFVEPESIWLIGTSHVSKDSAIEVERVVRALRPDNVVVELCRSRAGIMYATANDELGKQLRSNMFSLSGTGFFGAIARSINLGGQTALALRLLLATFSSKISSDINRPFGDEFRAARKASEEVGAQIVLGDRPIEITLQRAWEAMNWTQKLSLVSSIISGIASSSNSSINKLKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALLSDTGNLRFRDLVGKHSSSYDGNGDFAEIRILVLVNTKYLLLSALFCLGFQPNTDRSNARENQDLRSGTQFPGFDPLLSSVFCDSRQPISQSVLKRFLFCEVSFLLFGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDGRRSPSPYRRERGSPDYGRGSSPYQRERGSPDYGRGRDRDRSRSRSPPRRERASPAYGRRSPSPYKREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGRKSPRNDRSGSSHSPRDTVKTSPENGHGSGSPEEKGNPSPYNGYGGSPNTMPDPRDSPNYGGPESPMHERYRRPANINLFL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2224 774 SUPERFAMILY RNA-binding domain, RBD 405 573 IPR035979 GO:0003676
Aed1g2224 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 477 IPR000504 GO:0003723
Aed1g2224 774 MobiDBLite consensus disorder prediction 571 774 - -
Aed1g2224 774 Pfam TraB/PrgY/gumN family 85 248 IPR002816 -
Aed1g2224 774 Gene3D - 490 579 IPR012677 -
Aed1g2224 774 Gene3D - 403 489 IPR012677 -
Aed1g2224 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 569 IPR000504 GO:0003723
Aed1g2224 774 CDD RRM2_AtRSp31_like 499 568 - -
Aed1g2224 774 PANTHER BNAC08G47240D PROTEIN 407 609 - -
Aed1g2224 774 MobiDBLite consensus disorder prediction 693 707 - -
Aed1g2224 774 MobiDBLite consensus disorder prediction 619 681 - -
Aed1g2224 774 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 407 609 - -
Aed1g2224 774 SMART rrm1_1 499 565 IPR000504 GO:0003723
Aed1g2224 774 SMART rrm1_1 406 473 IPR000504 GO:0003723
Aed1g2224 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 562 IPR000504 GO:0003723
Aed1g2224 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 465 IPR000504 GO:0003723
Aed1g2224 774 MobiDBLite consensus disorder prediction 571 605 - -
Aed1g2224 774 CDD TraB_PrgY-like 95 294 IPR046345 -
Aed1g2224 774 CDD RRM1_AtRSp31_like 405 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2224 Aed-Chr1 18530531 18541503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2224 407 564 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 3.98e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2224 K12893 - gmx:100796509 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2224 1 18530531 18541503 Aed1g2224 1 18530531 18541503 ECH