Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2223 ATGGATGGCAACCCTTCTGGAAACGTGCCACCCCCACCAATACAAGTTCCTGATAACTTGAATATCTCTTCTTCCTCAACCACGTCGTCTCCGTCTCCGTCTCCGTCACCCTCCGGAGGCATCCGGTACCGTGGGACGCGGTGCCGGAGCGGGAAGTGGGTGTCGGAGATACGGGAGCCACGTAAAACGAAGCGCATTTGGCTGGGGACTTACCCGACAGCGGAAATGGCTGCGGCGGCTTATGATGTCGCGGCTCTCGCGTTGAAGGGCCCCGACACGTCCCTTAACTTTCCCAATTTGGTAATCTCGTACCCGATCCCTGCGTCATTGTCCGCCACCGATATTCGCGCCGCGGCTGCGGCCGCGGCGCATGCTAGGATCGTGAGGGCGCCGCAGGAGGGTGGGGAAACGGTAAACCCTGAGCAAGGGTTGTTGGAGATGCGTGAGGAGTACATTGATGAAGATGAGTTGTTGAACATGCCGAATTTGCTGGATGATATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCACTTCCTTTTCTTCAGATGATTCGCCTGGGAATTCTGATGGAGATAACCTTTGGAGTTATACCATTTGA 603 0.5589 MDGNPSGNVPPPPIQVPDNLNISSSSTTSSPSPSPSPSGGIRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTSLNFPNLVISYPIPASLSATDIRAAAAAAAHARIVRAPQEGGETVNPEQGLLEMREEYIDEDELLNMPNLLDDMARGMQVSPPRITSFSSDDSPGNSDGDNLWSYTI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2223 200 MobiDBLite consensus disorder prediction 175 200 - -
Aed1g2223 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 35 198 - -
Aed1g2223 200 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677
Aed1g2223 200 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Aed1g2223 200 SMART rav1_2 42 104 IPR001471 GO:0003700|GO:0006355
Aed1g2223 200 MobiDBLite consensus disorder prediction 1 45 - -
Aed1g2223 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 198 - -
Aed1g2223 200 MobiDBLite consensus disorder prediction 18 39 - -
Aed1g2223 200 ProSiteProfiles AP2/ERF domain profile. 42 98 IPR001471 GO:0003700|GO:0006355
Aed1g2223 200 MobiDBLite consensus disorder prediction 174 200 - -
Aed1g2223 200 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Aed1g2223 200 Pfam AP2 domain 47 90 IPR001471 GO:0003700|GO:0006355
Aed1g2223 200 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2223 Aed-Chr1 18518436 18519038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2223 43 198 AP2-EREBP Transcription Factor Family AT5G52020 58.824 5.41e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g2223 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2223 - - gmx:100776717 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2223 1 18518436 18519038 Aed1g2223 1 18518436 18519038 ECH