Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2222 ATGTTTTCCATCAATCATTTCTCCGACCCGCATGCCACCTCGCCGGGGCCGGGAACTTCCCGACCGGCTCTGTCGGACGAGGACTTTTTTCTGGCGGCGAGCCACCCTAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCAGTGTTCCGCGGCGTCAGAAGAAGGGACTCCGGCAAGTGGGTGTGCGAGGTGCGTGAGCCCAATAAGAAGTCCAGGATTTGGCTAGGAACCTTCCCCACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCCATCGCGCTGAGGGGAAGGTCCGCCTGCCTAAACTTCGCGGACTCCACGTGGCGGCTTCCGGTGCCGGCCACGGCGGAGGCCAGGGACATTCAGAAGGCTGCGGCGGAGGCCGCGGAGGCGTTTCGCCCGGGGACAGAGAAGGATGATGATACGGTGGCGGAGACGGCGGCGAAGGAGACGGAGGGGGAAGAAGAAGGGATGGTGCCGGAGTATCTGAGGAACATGGTGCTGATGTCGCCGATGCATTGCTTCGGGAGTGATGAGTATGGAAGTGCTGACGTGGAATCTGACGATGCTGGAGTTTCCTTGTGGAGTTACTCCATTTAA 615 0.6211 MFSINHFSDPHATSPGPGTSRPALSDEDFFLAASHPKKRAGRKKFRETRHPVFRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSTWRLPVPATAEARDIQKAAAEAAEAFRPGTEKDDDTVAETAAKETEGEEEGMVPEYLRNMVLMSPMHCFGSDEYGSADVESDDAGVSLWSYSI 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2222 204 MobiDBLite consensus disorder prediction 1 24 - -
Aed1g2222 204 MobiDBLite consensus disorder prediction 137 162 - -
Aed1g2222 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 204 IPR045277 GO:0003700
Aed1g2222 204 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Aed1g2222 204 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Aed1g2222 204 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Aed1g2222 204 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g2222 204 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 17 204 - -
Aed1g2222 204 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Aed1g2222 204 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Aed1g2222 204 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Aed1g2222 204 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Aed1g2222 204 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2222 Aed-Chr1 18507936 18508550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2222 31 202 AP2-EREBP Transcription Factor Family AT5G51990 54.822 4.21e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed1g2222 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2222 - K09286 gmx:100101894 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2222 1 18507936 18508550 Aed11g1690 11 20610697 20611433 ECH
Aed1g2222 1 18507936 18508550 Aed1g2222 1 18507936 18508550 ECH
Aed7g0526 7 3821126 3821851 Aed1g2222 1 18507936 18508550 PCT