Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2220 ATGGCTGTTGCCAAGAGCAACAGCAGCAGTGAACATTCAACTTCATATAATTGTTACAAAGTAGCAAGCTTGACCAAAACCATATTAGACACAAACCAAATCTCTAATTTGAAAGATCGATACGTTCTTGGAGAGCAGTTGGGTTGGGGGCAATTTGGTGTCATAAGAACATGCTCTGACAAGCTGACCGGAGAGGTTTGGGCCTGCAAATCTATTGCTAAAGATAGGTTGGTTACTTCAGATGATCTGCGGAGTGTTAAACTTGAAATTGAGATAATGACTAGGTTATCTGAGCACCCAAATGTCGTAGATCTCGAGGCAGTTTATGAAGACGAGGATTTTGTTCATTTGGTGATGGAGCTTTGTGCCGGAGGAGAGTTGTTTCATCTGTTAGAGAAGTATGGACGATTTTCTGAATTTGAAGCCAGGGTTCTCTTTCGGCATCTCATGCAGATGGTTTTGTATTGTCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTGGCAACTAGAGCTTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGACAGAGTTTGCATGGATTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTGGCAGGTGCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACTAAGTCACGGATATTTGAATCGGTTAAGACTGCTAACCTGAGGTTCCCATCTGAGCCTTGGGATTGCATTTCTGAATCAGCCAAGGATTTGATTAGGGGAATGTTATGCAGAGAATCTTCTCGAAGGCTCACTGCCAAGGAGGTTTTGGATCATGACTGGATGGAAAGCAATCAAACAAATCCTGAACAACTAAGTGAACATAAAATTACAAGTGGTGGAGAGTGGGATGTTGGTAGCGACTCATTCTCTACCCCGTTTATGTCCAGGAATAAGGACATAAGCTTTGGCGCTGAATCTCCTACATGTGGCGCTCAATCACCTATGTTCACATGCAAATCATCGTTTTCTTCCTTATTTGAGGAACCAGTGACACCTTGTTCTGTTTCTGGTGGATTTCTATTTCAGCACTCAGGTGGTTCCACTACTGATTTGGAATTTTCTTCTACTATTCCCTCAATGCTTAGCTTTGCATTTATCAGCCCCAGTTCTGTTGCTGAGCAAAGGGGTTGTGTATCAGAAATCCTAACTAACACGTCAAATGCAATACCAATTGCTGGAGAGATTGATTGTAAGCCTGTAGAGGGTAAAAGGGAAGGTGGAACGAATGGCCATAGGGCATTGGGATTACACAACAAGAGAAACCGCACCATTGGACTGGGCGAGTGTGAACAACTTGATCTTGTGGTGACTGAATCAATCATTCGTTGGTCATCATGCACCCAACTTCCTACATCACCAAGATCATCTCTAGTCTGTTGA 1494 0.4317 MAVAKSNSSSEHSTSYNCYKVASLTKTILDTNQISNLKDRYVLGEQLGWGQFGVIRTCSDKLTGEVWACKSIAKDRLVTSDDLRSVKLEIEIMTRLSEHPNVVDLEAVYEDEDFVHLVMELCAGGELFHLLEKYGRFSEFEARVLFRHLMQMVLYCHENGVVHRDLKPENILLATRASSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFESVKTANLRFPSEPWDCISESAKDLIRGMLCRESSRRLTAKEVLDHDWMESNQTNPEQLSEHKITSGGEWDVGSDSFSTPFMSRNKDISFGAESPTCGAQSPMFTCKSSFSSLFEEPVTPCSVSGGFLFQHSGGSTTDLEFSSTIPSMLSFAFISPSSVAEQRGCVSEILTNTSNAIPIAGEIDCKPVEGKREGGTNGHRALGLHNKRNRTIGLGECEQLDLVVTESIIRWSSCTQLPTSPRSSLVC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2220 497 SUPERFAMILY Protein kinase-like (PK-like) 38 361 IPR011009 -
Aed1g2220 497 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2220 497 CDD STKc_CAMK 40 298 - -
Aed1g2220 497 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 5 493 - -
Aed1g2220 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Aed1g2220 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 493 - -
Aed1g2220 497 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2220 497 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Aed1g2220 497 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Aed1g2220 497 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2220 497 Gene3D Transferase(Phosphotransferase) domain 1 128 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2220 Aed-Chr1 18492913 18497543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2220 24 306 EF-hand Containing Proteins AT3G57530 48.057 2.40e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed1g2220 Pkinase 3.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2220 - - gmx:100776088 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2220 1 18492913 18497543 Aed1g2220 1 18492913 18497543 ECH