Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2212 ATGGTGAGGGGAAAGGTTCAAATGAAGAAGATTGAGGATACAACAAGCCGTCAAGTGACGTTTTCAAAGCGTAAAAGTGGTCTTCTAAAGAAAGCTTACGAGTTATCTGTTCTTTGTGATGCACAAGTAGCTGCCATAGTCTTCTCACAGAACGGAAGGCTCTATGAGTTCTCAAGTTCTGACATGACAAAGATTTTGGAACGATACCGTGAGTATGCCAAAGATGTTCCAACCAATAAGTTCGGAGACGATTATATCCAGCAGCAACTGAAGTTAGACACCGCAAGCATGGAAAAGAAGATTGAACTTCTTGAACATTCTAAAAGGAAGCTTCTGGGACAAAGCGTGAGTTCTTGTTCTTATGATGAACTCAAAGGAATTGAGGAGCAGCTGCAGAGAAGTTTGCAAAGTGTCAGGCAGAGAAAAACTCAACTACATATGGAACAGATTGATCAACTACGATCTCAGGAGAGTAAGTTGCTCAGAGAGAATGCCAAATTAAGTGCAATGGGACACTACCCTTTTCTAAGCTTCTGTTGTTGGTGGCAGCAGCAGCAGCAATGGCCTAGACACACACAAGAAGAAGCAGAAGCAGCACTCCACTGTCACTGTTCAAGCAGCCAGAGTTTAGATGTGGATACAGAACTATTTATTGGACTTCCAAACCAGAATTGCTGA 678 0.4248 MVRGKVQMKKIEDTTSRQVTFSKRKSGLLKKAYELSVLCDAQVAAIVFSQNGRLYEFSSSDMTKILERYREYAKDVPTNKFGDDYIQQQLKLDTASMEKKIELLEHSKRKLLGQSVSSCSYDELKGIEEQLQRSLQSVRQRKTQLHMEQIDQLRSQESKLLRENAKLSAMGHYPFLSFCCWWQQQQQWPRHTQEEAEAALHCHCSSSQSLDVDTELFIGLPNQNC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2212 225 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Aed1g2212 225 ProSiteProfiles K-box domain profile. 87 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed1g2212 225 Coils Coil 150 170 - -
Aed1g2212 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed1g2212 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed1g2212 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed1g2212 225 PANTHER MADS-BOX PROTEIN SOC1 1 221 - -
Aed1g2212 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed1g2212 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed1g2212 225 Pfam K-box region 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed1g2212 225 PANTHER MADS BOX PROTEIN 1 221 - -
Aed1g2212 225 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Aed1g2212 225 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Aed1g2212 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed1g2212 225 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2212 Aed-Chr1 18450122 18454025 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2212 1 145 MADS-box Gene Family AT5G62165 64.828 5.35e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed1g2212 K-box 8.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2212 - - gmx:100800580 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2212 1 18450122 18454025 Aed1g2212 1 18450122 18454025 ECH